With ecosystem, we mean single-cell related tools that operate on :class:`~anndata.AnnData`. Here, we list some that do not have an interface in the :doc:`external API <external/index>`.
Interactive manifold viewers.
- cellxgene via direct reading of .h5ad CZI
- cell browser via exporing through :func:`~scanpy.external.exporting.cellbrowser` UCSC
- SPRING via exporting through :func:`~scanpy.external.exporting.spring_project` Harvard Med
- the Gene Expression Analysis Resource U Maryland
- the Galaxy Project for the Human Cell Atlas [tweet] U Freiburg
- the Expression Atlas EMBL-EBI
- scVelo Helmholtz Munich
- diffxpy Helmholtz Munich
- scVI, see comparison Berkeley
- scanaroma MIT