scGPT Title: scGPT: Towards Building a Foundation Model for Single-Cell Multi-omics Using Generative AI [bioRxiv] Authors: Haotian Cui, Chloe Wang, Hassaan Maan, Bo Wang Codebase: https://github.com/bowang-lab/scGPT Abbreviations Modelling AMP: Automatic Mixed Precision CCE: Contrastive Cell Embedding CLS: Celltype Classification DAR (DAB): Domain Adaptation by Reverse Backpropagation DSBN: Domain-Specific Batch Norm ECS: Elastic Cell Similarity GEP: Gene Expression Prediction GEPC: Gene Expression Prediction for Cell Modelling GPT: Generative Pre-trained Transformer KSA: Kernelized Self-Attention MGM: Masked Gene Modelling MLM: Masked Language Modelling MRE: Masked Relative Error MSE: Mean Squared Error MVC: Masked Value Prediction for Cell Embedding Single-Cell ARI: Adjusted Rand Index ASAP-seq: ATAC with Select Antigen Profiling by sequencing ASW: Average Silhouette Width ATAC-seq: Assay for Transposase-Accessible Chromatin using sequencing HCA: Human Cell Atlas NMI: Normalized Mutual Information PBMC: Peripheral Blood Mononuclear Cell