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Assertion error in skeleton_analysis #66

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LuanMagioli opened this issue Aug 13, 2021 · 1 comment

LuanMagioli commented Aug 13, 2021

AssertionError: Sliced image shape does not equal the mask shape. This should never happen! If you see this issue, please report it as a bug!

fil = FilFinder2D(thresh, mask=thresh, distance= 100*u.pc)
fil.create_mask(border_masking=True, verbose=False, use_existing_mask=True)
fil.preprocess_image(flatten_percent=100)
fil.medskel(verbose=False)
fil.analyze_skeletons()

The text was updated successfully, but these errors were encountered:

Owner

e-koch commented Aug 17, 2021

@LuanMagioli -- Thanks for posting this error!

Would you mind giving me a few more details to help figure out what went wrong?

image size
number of filaments in the thresh image

If you're able to share the thresh image, I can look in a bit more detail. You can contact me offline at koch.eric.w AT gmail.com.

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