changed survival object in single protein summary

mstaniak · web-flow · commit 7f582875029a · 2021-05-31T02:03:28.000+02:00
diff --git a/R/dataProcess.R b/R/dataProcess.R
@@ -315,7 +315,8 @@ MSstatsSummarizeSingleTMP = function(single_protein, impute, censored_symbol,
                                                 predicted, newABUNDANCE)]
         survival = single_protein[, c(cols, "predicted"), with = FALSE]
     } else {
-        survival = NULL
+        survival = single_protein
+        survival[, predicted := NA]
     }
     
     single_protein = .isSummarizable(single_protein, remove50missing)

Original file line number	Diff line number	Diff line change
`@@ -315,7 +315,8 @@ MSstatsSummarizeSingleTMP = function(single_protein, impute, censored_symbol,`
`315`	`315`	`predicted, newABUNDANCE)]`
`316`	`316`	`survival = single_protein[, c(cols, "predicted"), with = FALSE]`
`317`	`317`	`} else {`
`318`		`- survival = NULL`
	`318`	`+ survival = single_protein`
	`319`	`+ survival[, predicted := NA]`
`319`	`320`	`}`
`320`	`321`
`321`	`322`	`single_protein = .isSummarizable(single_protein, remove50missing)`