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sankey vizualization #116

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Yogesh1-11 opened this issue Dec 13, 2023 · 1 comment
Open

sankey vizualization #116

Yogesh1-11 opened this issue Dec 13, 2023 · 1 comment

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@Yogesh1-11
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Hi i am a evolutionary biology guy.
I loved the sankey visualization in pavian. is there any way to make this vizualization directly from taxid and scientific name? with cool colour changing possibility. from an overview it lloks like may be a dummy kraken report might help? please suggest

@jenniferlu717
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You would need a read column as well. I think if you made a report with these tab-delimited columns, then pavian can read it:

%
reads
level_reads
level_type (U, D, K, P, C, O, etc)
taxID
names (delimited in tree order - two spaces per level)

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