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Error when loading KrakenUniq reports #39

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Krischan opened this issue Oct 3, 2018 · 2 comments
Closed

Error when loading KrakenUniq reports #39

Krischan opened this issue Oct 3, 2018 · 2 comments

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@Krischan
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Krischan commented Oct 3, 2018

The (very useful) comment lines in the KrakenUniq report prevent loading.

@fbreitwieser
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Hi @Krischan , thanks for reporting this! This should be fixed in the current version.

@ZhouHui0916
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Hi fbreitwieser ,The web site https://fbreitwieser.shinyapps.io/pavian/ can not support krakenuniq --report-file .Or i missed something. The formats are as follows.

% reads taxReads kmers dup cov taxID rank taxName
76.28 5141281 5141281 3266800457 1.1 1.12e+05 0 no rank unclassified
23.72 1598943 241 2295577120 1.06 0.105 1 no rank root
23.71 1597928 564 2295577120 1.06 0.1061 131567 no rank cellular organisms
15.73 1060337 0 2258287516 1.05 0.9016 2759 superkingdom Eukaryota
15.73 1060337 0 2258287516 1.05 0.9016 33154 no rank Opisthokonta
15.73 1060337 0 2258287516 1.05 0.9016 33208 kingdom Metazoa

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