*.kraken file not working?

[wolfgangrumpf]

Whenever I load a .kraken file I get an error saying that the report format is bad. Are .kraken files not supported?

[rltillett]

I'm also having trouble in having Pavian recognize reports from kraken2. Neither my own report, nor the one shared by a commenter in issue #38 #38 (comment) are recognized in the online version of pavian at this moment...

• My kraken2 report Fla_19.report.kraken2.txt
• The one uploaded in issue Kraken2 reports not opening in Pavian #38 P3HR1_180612_K_540_IonXpressRNA_013.fastq.fasta_report.kraken2.txt

[gringer]

These files work in the docker image florianbw/pavian:latest. I'm guessing that the shinyapps version just hasn't been updated.

[fbreitwieser]

Hi, sorry for the late reply, @wolfgangrumpf , indeed the kraken read-level files are not supported, only the report summary files.

@rltillett and @gringer , the shinyapps.io has been updated just now!
Florian