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Commits on Sep 2, 2014

• Remove a unit test -- test file no longer exists

  jrobinso

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  bfd9901

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Commits on Aug 29, 2014

• Rollback change to exon number counting -- exon numbers are exon numbers, not cds numbers.

  jrobinso

  committed
  7f576b5

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Commits on Aug 28, 2014

• Add igv.php

  jrobinso

  committed
  d3e00f0

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Commits on Aug 27, 2014

• Ga4gh changes. Some genome model cleanup.

  jrobinso

  committed
  29e9901

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• Fix for ssl hostname verification problem

  jrobinso

  committed
  e7f30b1

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Commits on Aug 26, 2014

• fix unit test

  jrobinso

  committed
  0130376

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• fix unit test

  jrobinso

  committed
  844ad13

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• fixes to genbank parser

  jrobinso

  committed
  a3e3951

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• Allow ".bgz" extension for tabix files

  jrobinso

  committed
  3aa6f81

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• Expand read window for alignments slightly

  jrobinso

  committed
  25a1a15

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• ga4gh progress

  jrobinso

  committed
  d584926

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Commits on Aug 25, 2014

• Fix unit test

  jrobinso

  committed
  c8d4649

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Commits on Aug 22, 2014

• More ga4gh. Using pageToken now to get all records, and renamed some classes

  jrobinso

  committed
  2f7b91a

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• Catch pathological case when drawing genes in exome mode

  jrobinso

  committed
  025efcd

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Commits on Aug 21, 2014

• GA4GH changes

  jrobinso

  committed
  fbb3555

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• Merge pull request igvteam#95 from etal/master

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  jrobinso

  committed
  28f4f44

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Commits on Aug 18, 2014

• CoverageTrack: make coverage values of 1 visible when log-transformed

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  etal

  committed
  7bc32bd

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• bug fix

  jrobinso

  committed
  5a8dbd9

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• GA4GH updates

  jrobinso

  committed
  d49359b

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Commits on Aug 17, 2014

• Fix unit tests

  jrobinso

  committed
  a2fb49c

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Commits on Aug 16, 2014

• Ga4gh checkpoint

  jrobinso

  committed
  d0c8ba3

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• Compute AA acids that span exon junctions

  jrobinso

  committed
  3e6f07a

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Commits on Aug 13, 2014

• Make nucleotide colors user settable.

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  jrobinso

  committed
  560da3a

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• enable mongo variant plugin by default

  jrobinso

  committed
  4b79060

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• Revert "remove na12878-utils jar"

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  jrobinso

  committed
  c40d9eb

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• remove na12878-utils jar

  jrobinso

  committed
  c662e0e

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Commits on Aug 12, 2014

• Add preference to filter supplementary alignments

  jrobinso

  committed
  b9bd0bd

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Commits on Aug 11, 2014

• Fix bigwig error

  jrobinso

  committed
  81aec4f

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Commits on Aug 8, 2014

• misc alignment packing refactoring and bug fixes

  jrobinso

  committed
  3d1fb52

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Commits on Aug 7, 2014

• Roll back "global alignment packing." Apparently this was never tested with frames on different chromosomes, it needs a rethink.

  jrobinso

  committed
  7971bf4

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Commits on Aug 6, 2014

• Unit test tweak

  jrobinso

  committed
  b2c5b90

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• Enable 2 column region files (chr position)

  jrobinso

  committed
  dbfd224

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Commits on Aug 5, 2014

• Unit test improvement

  jrobinso

  committed
  cef1d1a

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• Cleanup error streams in httputils

  jrobinso

  committed
  d36125f

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Commits on Aug 4, 2014

• Parsing SA tag

  jrobinso

  committed
  11afdea

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