From 5f96740851cf110a73f1225e3233a0f93c4bcfd0 Mon Sep 17 00:00:00 2001
From: Ka-Ping Yee <ping@zesty.ca>
Date: Sun, 1 Feb 2015 17:06:22 +0000
Subject: [PATCH] Add db-init package.

---
 .gitmodules                                   |  3 +
 db-snapshot                                   |  1 +
 packages/buendia-backup/Makefile              |  6 --
 .../buendia-backup/control/control.template   |  2 +-
 packages/buendia-db-init/Makefile             |  7 ++
 .../buendia-db-init/control/control.template  |  6 ++
 packages/buendia-db-init/control/postinst     | 18 +++++
 packages/buendia-db-init/control/preinst      | 16 +++++
 .../root/usr/share/buendia/db/site-dev.sql    | 67 +++++++++++++++++++
 .../root/usr/share/buendia/db/site-kh.sql     | 61 +++++++++++++++++
 packages/buendia-mysql/Makefile               | 12 ++++
 packages/buendia-mysql/control/postinst       |  3 +-
 packages/buendia-mysql/control/postrm         |  4 --
 packages/buendia-mysql/control/prerm          |  6 ++
 packages/buendia-mysql/root/etc/my.cnf        |  2 +
 packages/buendia-pkgserver/Makefile           |  6 +-
 16 files changed, 205 insertions(+), 15 deletions(-)
 create mode 160000 db-snapshot
 create mode 100644 packages/buendia-db-init/Makefile
 create mode 100644 packages/buendia-db-init/control/control.template
 create mode 100644 packages/buendia-db-init/control/postinst
 create mode 100644 packages/buendia-db-init/control/preinst
 create mode 100644 packages/buendia-db-init/root/usr/share/buendia/db/site-dev.sql
 create mode 100644 packages/buendia-db-init/root/usr/share/buendia/db/site-kh.sql
 delete mode 100644 packages/buendia-mysql/control/postrm
 create mode 100644 packages/buendia-mysql/control/prerm
 create mode 100644 packages/buendia-mysql/root/etc/my.cnf

diff --git a/.gitmodules b/.gitmodules
index 0b32f21c..b6e3098b 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -4,3 +4,6 @@
 [submodule "buendia-libs"]
 	path = buendia-libs
 	url = ../buendia-libs
+[submodule "db-snapshot"]
+	path = db-snapshot
+	url = ../db-snapshot
diff --git a/db-snapshot b/db-snapshot
new file mode 160000
index 00000000..163fbc41
--- /dev/null
+++ b/db-snapshot
@@ -0,0 +1 @@
+Subproject commit 163fbc418084fe6c790cb2bc457a3520d703e452
diff --git a/packages/buendia-backup/Makefile b/packages/buendia-backup/Makefile
index 22d9026f..f77e46b3 100644
--- a/packages/buendia-backup/Makefile
+++ b/packages/buendia-backup/Makefile
@@ -1,7 +1 @@
 include ../Makefile.inc
-
-$(EXTRA_ROOT): $(EXTRA_ROOT)/usr/bin/buendia-mysql-dump
-
-$(EXTRA_ROOT)/usr/bin/buendia-mysql-dump:
-	mkdir -p $$(dirname $@)
-	cp -p $(TOOLS)/openmrs_dump $@
diff --git a/packages/buendia-backup/control/control.template b/packages/buendia-backup/control/control.template
index ed297d0d..cffe45ff 100644
--- a/packages/buendia-backup/control/control.template
+++ b/packages/buendia-backup/control/control.template
@@ -1,6 +1,6 @@
 Package: ${PACKAGE_NAME}
 Version: ${PACKAGE_VERSION}
-Depends: buendia-mysql, buendia-utils
+Depends: buendia-mysql
 Architecture: all
 Description: Backup and restore for Buendia.
 Maintainer: projectbuendia.org
diff --git a/packages/buendia-db-init/Makefile b/packages/buendia-db-init/Makefile
new file mode 100644
index 00000000..e077ef7c
--- /dev/null
+++ b/packages/buendia-db-init/Makefile
@@ -0,0 +1,7 @@
+include ../Makefile.inc
+
+$(EXTRA_ROOT): $(EXTRA_ROOT)/usr/share/buendia/db/init.zip
+
+$(EXTRA_ROOT)/usr/share/buendia/db/init.zip: $(TOP)/db-snapshot/ID $(TOP)/db-snapshot/*.sql $(TOP)/db-snapshot/*.txt
+	mkdir -p $$(dirname $@)
+	zip -j $@ $^
diff --git a/packages/buendia-db-init/control/control.template b/packages/buendia-db-init/control/control.template
new file mode 100644
index 00000000..6522d10e
--- /dev/null
+++ b/packages/buendia-db-init/control/control.template
@@ -0,0 +1,6 @@
+Package: ${PACKAGE_NAME}
+Version: ${PACKAGE_VERSION}
+Depends: buendia-mysql, buendia-site
+Architecture: all
+Description: Initial data for the Buendia database.
+Maintainer: projectbuendia.org
diff --git a/packages/buendia-db-init/control/postinst b/packages/buendia-db-init/control/postinst
new file mode 100644
index 00000000..a925b122
--- /dev/null
+++ b/packages/buendia-db-init/control/postinst
@@ -0,0 +1,18 @@
+#!/bin/bash
+
+set -e
+. /usr/share/buendia/site/id
+. /usr/share/buendia/site/mysql
+
+# Create a fresh new database populated with the initial data.
+export MYSQL_USER=root
+export MYSQL_PASSWORD=$MYSQL_ROOT_PASSWORD
+buendia-mysql-load openmrs /usr/share/buendia/db/init.zip
+
+# Add site-specific initial data.
+site_sql=/usr/share/buendia/db/site-${SITE_ID}.sql
+[ -f $site_sql ] && mysql -uroot -p$MYSQL_ROOT_PASSWORD openmrs < $site_sql
+
+# Reapply the OpenMRS user/password/person setup used by the Buendia server.
+config_server=/usr/share/buendia/config.d/server
+[ -f $config_server ] && $config_server
diff --git a/packages/buendia-db-init/control/preinst b/packages/buendia-db-init/control/preinst
new file mode 100644
index 00000000..2995db18
--- /dev/null
+++ b/packages/buendia-db-init/control/preinst
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+set -e
+service mysql start
+. /usr/share/buendia/site/mysql
+
+if ! mysql -u$MYSQL_ROOT_USER -p$MYSQL_ROOT_PASSWORD -e ''; then
+    echo "MySQL configuration problem: cannot connect as root."
+    exit 1
+fi
+
+if mysql -u$MYSQL_ROOT_USER -p$MYSQL_ROOT_PASSWORD -e '' openmrs; then
+    echo "Installing buendia-db-init would destroy all data in the existing"
+    echo "MySQL database 'openmrs'!  Not installing."
+    exit 1
+fi
diff --git a/packages/buendia-db-init/root/usr/share/buendia/db/site-dev.sql b/packages/buendia-db-init/root/usr/share/buendia/db/site-dev.sql
new file mode 100644
index 00000000..7a5a4469
--- /dev/null
+++ b/packages/buendia-db-init/root/usr/share/buendia/db/site-dev.sql
@@ -0,0 +1,67 @@
+/*
+ * This script takes a database cleared by clear_server.sql and sets
+ * up initial data that will work for most EMCs.
+ * It also double-checks some data that should already be present
+ * and adds it if missing.
+ *
+ * Bear in mind this assume you are working from a snapshot of our
+ * GCE instance, and so doesn't add the whole concept dictionary etc,
+ * as keeping a script up to date is harder than keeping the real database
+ * up to date.
+ */
+
+-- System Users: make sure Android is present
+-- This is surprisingly hard as there is not a unique constraint on username
+-- or system_id, so the normal tricks for INSERT IF NOT EXISTS don't work.
+-- Ignoring for now.
+
+-- Buendia users - make sure user, provider and person information present
+-- for Guest User
+
+-- Program. Make sure Ebola program is present.
+
+
+-- Location make sure Camp, and zones are present. Create tents.
+-- ON DUPLICATE IGNORE is safe as there is a unique index on uuid
+SELECT @android := user_id FROM users WHERE username='android' LIMIT 1;
+INSERT INTO location (name, creator, date_created, uuid) VALUES
+    ('Facility', @android, NOW(), 'e20f2bf8-8650-11e4-9aee-040ccecfdba4')
+    ON DUPLICATE KEY UPDATE uuid=uuid;
+SELECT @emc_id := location_id FROM location WHERE uuid='e20f2bf8-8650-11e4-9aee-040ccecfdba4' LIMIT 1;
+-- insert the zones
+INSERT INTO location (name, creator, date_created, uuid, parent_location) VALUES
+    ('Triage', @android, NOW(), '3f75ca61-ec1a-4739-af09-25a84e3dd237', @emc_id),
+    ('Suspected Zone', @android, NOW(), '2f1e2418-ede6-481a-ad80-b9939a7fde8e', @emc_id),
+    ('Probable Zone', @android, NOW(), '3b11e7c8-a68a-4a5f-afb3-a4a053592d0e', @emc_id),
+    ('Confirmed Zone', @android, NOW(), 'b9038895-9c9d-4908-9e0d-51fd535ddd3c', @emc_id),
+    ('Morgue', @android, NOW(), '4ef642b9-9843-4d0d-9b2b-84fe1984801f', @emc_id),
+    ('Discharged', @android, NOW(), 'd7ca63c3-6ea0-4357-82fd-0910cc17a2cb', @emc_id)
+    ON DUPLICATE KEY UPDATE uuid=uuid;
+
+-- Make sure the allowed locales is correct
+UPDATE global_property SET property_value="en, en_GB_client" WHERE property = "locale.allowed.list";
+
+-- Insert the tents (more than enough in each zone to work at most EMCs).
+SELECT @confirmed_id := location_id FROM location WHERE uuid='b9038895-9c9d-4908-9e0d-51fd535ddd3c' LIMIT 1;
+SELECT @suspect_id := location_id FROM location WHERE uuid='2f1e2418-ede6-481a-ad80-b9939a7fde8e' LIMIT 1;
+SELECT @probable_id := location_id FROM location WHERE uuid='3b11e7c8-a68a-4a5f-afb3-a4a053592d0e' LIMIT 1;
+INSERT INTO location (name, creator, date_created, uuid, parent_location) VALUES
+    ('S1', @android, NOW(), 'a72f944b-cb50-4bc5-9ac0-f93c44d71b10', @suspect_id),
+    ('S2', @android, NOW(), 'd81a33d9-2711-47e2-9d47-77e32e0281b9', @suspect_id),
+    ('S3', @android, NOW(), 'c7a69e19-8650-11e4-9cc2-040ccecfdba4', @suspect_id),
+    ('S4', @android, NOW(), 'c87ad5ab-8650-11e4-afd6-040ccecfdba4', @suspect_id),
+    ('P1', @android, NOW(), '0d36bdce-7f0a-11e4-88ec-42010af084c0', @probable_id),
+    ('P2', @android, NOW(), '0d36beb7-7f0a-11e4-88ec-42010af084c0', @probable_id),
+    ('P3', @android, NOW(), 'c89d00a1-8650-11e4-a82d-040ccecfdba4', @probable_id),
+    ('P4', @android, NOW(), 'c8ba4385-8650-11e4-8641-040ccecfdba4', @probable_id),
+    ('C1', @android, NOW(), '46a8cb21-d9eb-416d-86ee-90a018122859', @confirmed_id),
+    ('C2', @android, NOW(), '0a49d383-7019-4f1f-bf4b-875f2cd58964', @confirmed_id),
+    ('C3', @android, NOW(), '4443985e-adbc-4c90-aaac-b27635cb73ac', @confirmed_id),
+    ('C4', @android, NOW(), '3ca154be-afd1-4074-893d-596bcb423a54', @confirmed_id),
+    ('C5', @android, NOW(), '6b993dab-7f0a-11e4-88ec-42010af084c0', @confirmed_id),
+    ('C6', @android, NOW(), '0cce735e-a0c8-4b21-a05e-539b6bb93441', @confirmed_id),
+    ('C7', @android, NOW(), '5542080a-45db-435e-8505-8e65309ae9d5', @confirmed_id),
+    ('C8', @android, NOW(), '87233c64-125a-4e8e-b292-f866a8ecb2b4', @confirmed_id),
+    ('C9', @android, NOW(), 'c8d6607a-8650-11e4-9dfb-040ccecfdba4', @confirmed_id),
+    ('C10', @android, NOW(), 'c8f5a8d7-8650-11e4-81c0-040ccecfdba4', @confirmed_id)
+    ON DUPLICATE KEY UPDATE uuid=uuid;
diff --git a/packages/buendia-db-init/root/usr/share/buendia/db/site-kh.sql b/packages/buendia-db-init/root/usr/share/buendia/db/site-kh.sql
new file mode 100644
index 00000000..f2132e3a
--- /dev/null
+++ b/packages/buendia-db-init/root/usr/share/buendia/db/site-kh.sql
@@ -0,0 +1,61 @@
+/*
+ * This script takes a database cleared by clear_server.sql and sets
+ * up initial data required for a start at Kailahun.
+ * It will also double checks some data that should already be present
+ * and adds it if missing.
+ *
+ * Bear in mind this assume you are working from a snapshot of our
+ * GCE instance, and so doesn't add the whole concept dictionary etc,
+ * as keeping a script up to date is harder than keeping the real database
+ * up to date.
+ */
+
+-- System Users: make sure Android is present
+-- This is surprisingly hard as there is not a unique constraint on username
+-- or system_id, so the normal tricks for INSERT IF NOT EXISTS don't work.
+-- Ignoring for now.
+
+-- Buendia users - make sure user, provider and person information present
+-- for Guest User
+
+-- Program. Make sure Ebola program is present.
+
+
+-- Location make sure Camp, and zones are present. Create tents.
+-- ON DUPLICATE IGNORE is safe as there is a unique index on uuid
+SELECT @android := user_id FROM users WHERE username='android' LIMIT 1;
+INSERT INTO location (name, creator, date_created, uuid) VALUES
+    ('Facility Kailahun', @android, NOW(), '3449f5fe-8e6b-4250-bcaa-fca5df28ddbf')
+    ON DUPLICATE KEY UPDATE uuid=uuid;
+SELECT @emc_id := location_id FROM location WHERE uuid='3449f5fe-8e6b-4250-bcaa-fca5df28ddbf' LIMIT 1;
+-- insert the zones
+INSERT INTO location (name, creator, date_created, uuid, parent_location) VALUES
+    ('Triage', @android, NOW(), '3f75ca61-ec1a-4739-af09-25a84e3dd237', @emc_id),
+    ('Suspected Zone', @android, NOW(), '2f1e2418-ede6-481a-ad80-b9939a7fde8e', @emc_id),
+    ('Probable Zone', @android, NOW(), '3b11e7c8-a68a-4a5f-afb3-a4a053592d0e', @emc_id),
+    ('Confirmed Zone', @android, NOW(), 'b9038895-9c9d-4908-9e0d-51fd535ddd3c', @emc_id),
+    ('Morgue', @android, NOW(), '4ef642b9-9843-4d0d-9b2b-84fe1984801f', @emc_id),
+    ('Discharged', @android, NOW(), 'd7ca63c3-6ea0-4357-82fd-0910cc17a2cb', @emc_id)
+    ON DUPLICATE KEY UPDATE uuid=uuid;
+
+-- Make sure the allowed locales is correct
+UPDATE global_property SET property_value="en, en_GB_client" WHERE property = "locale.allowed.list";
+
+-- Kailahun specific. Insert the tents.
+SELECT @confirmed_id := location_id FROM location WHERE uuid='b9038895-9c9d-4908-9e0d-51fd535ddd3c' LIMIT 1;
+SELECT @suspect_id := location_id FROM location WHERE uuid='2f1e2418-ede6-481a-ad80-b9939a7fde8e' LIMIT 1;
+SELECT @probable_id := location_id FROM location WHERE uuid='3b11e7c8-a68a-4a5f-afb3-a4a053592d0e' LIMIT 1;
+INSERT INTO location (name, creator, date_created, uuid, parent_location) VALUES
+    ('S1', @android, NOW(), 'a72f944b-cb50-4bc5-9ac0-f93c44d71b10', @suspect_id),
+    ('S2', @android, NOW(), 'd81a33d9-2711-47e2-9d47-77e32e0281b9', @suspect_id),
+    ('P1', @android, NOW(), '0d36bdce-7f0a-11e4-88ec-42010af084c0', @probable_id),
+    ('P2', @android, NOW(), '0d36beb7-7f0a-11e4-88ec-42010af084c0', @probable_id),
+    ('C1', @android, NOW(), '46a8cb21-d9eb-416d-86ee-90a018122859', @confirmed_id),
+    ('C2', @android, NOW(), '0a49d383-7019-4f1f-bf4b-875f2cd58964', @confirmed_id),
+    ('C3', @android, NOW(), '4443985e-adbc-4c90-aaac-b27635cb73ac', @confirmed_id),
+    ('C4', @android, NOW(), '3ca154be-afd1-4074-893d-596bcb423a54', @confirmed_id),
+    ('C5', @android, NOW(), '6b993dab-7f0a-11e4-88ec-42010af084c0', @confirmed_id),
+    ('C6', @android, NOW(), '0cce735e-a0c8-4b21-a05e-539b6bb93441', @confirmed_id),
+    ('C7', @android, NOW(), '5542080a-45db-435e-8505-8e65309ae9d5', @confirmed_id),
+    ('C8', @android, NOW(), '87233c64-125a-4e8e-b292-f866a8ecb2b4', @confirmed_id)
+    ON DUPLICATE KEY UPDATE uuid=uuid;
diff --git a/packages/buendia-mysql/Makefile b/packages/buendia-mysql/Makefile
index f77e46b3..51122d69 100644
--- a/packages/buendia-mysql/Makefile
+++ b/packages/buendia-mysql/Makefile
@@ -1 +1,13 @@
 include ../Makefile.inc
+
+$(EXTRA_ROOT): $(EXTRA_ROOT)/usr/bin/buendia-mysql-dump $(EXTRA_ROOT)/usr/bin/buendia-mysql-load
+
+$(EXTRA_ROOT)/usr/bin/buendia-mysql-dump:
+	mkdir -p $$(dirname $@)
+	cp -p $(TOOLS)/openmrs_dump $@
+	chmod 755 $@
+
+$(EXTRA_ROOT)/usr/bin/buendia-mysql-load:
+	mkdir -p $$(dirname $@)
+	cp -p $(TOOLS)/openmrs_load $@
+	chmod 755 $@
diff --git a/packages/buendia-mysql/control/postinst b/packages/buendia-mysql/control/postinst
index ce4773f7..2d93b6da 100644
--- a/packages/buendia-mysql/control/postinst
+++ b/packages/buendia-mysql/control/postinst
@@ -1,5 +1,6 @@
 #!/bin/bash
 
 set -e
+buendia-divert $1 /etc/my.cnf
+service mysql restart
 /usr/share/buendia/config.d/mysql
-service mysql start
diff --git a/packages/buendia-mysql/control/postrm b/packages/buendia-mysql/control/postrm
deleted file mode 100644
index 57439f06..00000000
--- a/packages/buendia-mysql/control/postrm
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-
-set -e
-service mysql start
diff --git a/packages/buendia-mysql/control/prerm b/packages/buendia-mysql/control/prerm
new file mode 100644
index 00000000..2d93b6da
--- /dev/null
+++ b/packages/buendia-mysql/control/prerm
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+set -e
+buendia-divert $1 /etc/my.cnf
+service mysql restart
+/usr/share/buendia/config.d/mysql
diff --git a/packages/buendia-mysql/root/etc/my.cnf b/packages/buendia-mysql/root/etc/my.cnf
new file mode 100644
index 00000000..4e7dbbda
--- /dev/null
+++ b/packages/buendia-mysql/root/etc/my.cnf
@@ -0,0 +1,2 @@
+[mysqld]
+innodb_file_per_table=true
diff --git a/packages/buendia-pkgserver/Makefile b/packages/buendia-pkgserver/Makefile
index 9bd05d3b..63a6099c 100644
--- a/packages/buendia-pkgserver/Makefile
+++ b/packages/buendia-pkgserver/Makefile
@@ -7,15 +7,15 @@ $(EXTRA_ROOT): $(TARGET_DIR)/buendia-package-apt-indexer $(TARGET_DIR)/buendia-p
 
 $(TARGET_DIR)/buendia-package-apt-indexer: $(SOURCE_DIR)/buendia-package-apt-indexer
 	mkdir -p $$(dirname $@)
-	cp -p $< $@
+	cp -p $^ $@
 
 $(TARGET_DIR)/buendia-package-indexer.py: $(SOURCE_DIR)/buendia-package-indexer.py
 	mkdir -p $$(dirname $@)
-	cp -p $< $@
+	cp -p $^ $@
 
 $(TARGET_DIR)/buendia-package-usb-import: $(SOURCE_DIR)/buendia-package-usb-import
 	mkdir -p $$(dirname $@)
-	cp -p $< $@
+	cp -p $^ $@
 
 docker: $(PACKAGE)
 	docker build .