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93 results for source starred repositories
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create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks

Python 39 2 Updated Aug 7, 2024

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

Python 53 1 Updated Dec 20, 2024

A self-organizing file system with llama 3

Jupyter Notebook 5,032 316 Updated Oct 24, 2024

Cross-platform software to draw phylogenetic trees

C# 197 9 Updated Oct 26, 2024

Tools (written in C using htslib) for manipulating next-generation sequencing data

C 1,646 580 Updated Dec 12, 2024

app to collapse Pango lineages for reporting

Python 11 1 Updated Mar 20, 2024

Benchmarking adapter and quality trimming tools

Python 9 1 Updated Apr 8, 2024

Fast distance matrix calculations on fasta and cgmlst files

Rust 2 1 Updated Dec 19, 2024

A smarter cd command. Supports all major shells.

Rust 23,504 565 Updated Nov 15, 2024

Accessible Metagenomics/viromics for public health and clinical domains. Focuses on automation, accessibility and a clear audit trail.

Python 4 Updated Oct 29, 2024

A multi-threading implement of Python gzip module

Python 53 11 Updated Apr 12, 2024

Blazing-fast Data-Wrangling toolkit

Rust 2,561 74 Updated Dec 22, 2024

This action can be used to halt any workflow until required checks for a given ref (e.g., in a sibling workflow) pass successfully.

Ruby 346 61 Updated Oct 28, 2024

The uncompromising Python code formatter

Python 39,350 2,480 Updated Dec 23, 2024

β™Ύ Infisical is the open-source secret management platform: Sync secrets across your team/infrastructure, prevent secret leaks, and manage internal PKI

TypeScript 16,039 1,029 Updated Dec 23, 2024

Easily migrate your codebase from one framework or language to another.

Python 6,883 486 Updated Sep 17, 2024

πŸš€ Ready-to-run Prisma example projects

TypeScript 6,207 1,432 Updated Dec 21, 2024

FastAPI framework, high performance, easy to learn, fast to code, ready for production

Python 78,870 6,752 Updated Dec 20, 2024

Fastapi prisma template

Python 52 6 Updated Feb 28, 2023

This repository is a curated collection of links to various courses and resources about Artificial Intelligence (AI)

Python 5,470 495 Updated Apr 22, 2024

a long read simulator that can imitate many types of read problems

Python 187 22 Updated Jul 22, 2024

Creating and uploading containers to ghcr

Dockerfile 1 Updated May 2, 2023

Programmatically interact with the GISAID database.

R 72 9 Updated Sep 19, 2024

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Python 169,396 44,620 Updated Dec 23, 2024

Streamlit β€” A faster way to build and share data apps.

Python 36,316 3,126 Updated Dec 23, 2024

A scalable, distributed, collaborative, document-graph database, for the realtime web

Rust 28,354 927 Updated Dec 23, 2024

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Python 371 44 Updated Dec 1, 2023

Utilities for building and managing bioconda recipes

Python 98 134 Updated Dec 23, 2024

Run your GitHub Actions locally πŸš€

Go 56,333 1,423 Updated Dec 23, 2024

Grayskull πŸ’€ - Recipe generator for Conda

Python 326 70 Updated Dec 23, 2024
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