setup.py

#!/usr/bin/env python
"""
SeisLib: Seismic Imaging library for Python
"""

import os
from setuptools import find_packages
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy
import os
import platform



def readme():
	with open("README.md", "r") as f:
		return f.read()


def configuration(parent_package="", top_path=None):
	from numpy.distutils.misc_util import Configuration

	config = Configuration(None, parent_package, top_path)
	config.set_options(
		ignore_setup_xxx_py=True,
		assume_default_configuration=True,
		delegate_options_to_subpackages=True,
		quiet=True)

	# add the subpackage 'seislib' to the config (to call it's setup.py later)
	config.add_subpackage("seislib")

	return config

	

here = os.path.abspath(os.path.dirname(__file__))
about = {}
with open(os.path.join(here, 'seislib', "__version__.py")) as f:
	exec(f.read(), about)


def setup_cython_extension():
    ext_path = "seislib/tomography/_ray_theory/"
    ext_name = ext_path.replace("/", ".")
    names = ['_math', '_spherical_geometry', '_tomography']
    sources = ['%s.pyx'%name for name in names]
    extra_compile_args = ["-O3", "-ffast-math", "-march=native", "-fopenmp"]
    extra_link_args=['-fopenmp']
    platform_name = platform.system()
    if platform_name.lower() == 'darwin':
        src_paths = ['/usr/local', '/opt/homebrew']
        for src in src_paths:
            gcc_path = os.path.join(src, 'Cellar/gcc')
            if not os.path.exists(gcc_path):
                continue
            versions = os.listdir(gcc_path)
            version = max(versions, key=lambda i: int(i.split('.')[0]))
            version_int = version.split('.')[0]
            path = os.path.join(gcc_path, '%s/lib/gcc/%s'%(version, version_int))
            os.environ['CC'] = 'gcc-%s'%version_int
            os.environ['CXX'] = 'g++-%s'%version_int

    ext_modules = []
    for name, source in zip(names, sources):
        language = 'c++' if name!='_math' else None
        ext_modules.append(Extension(f"{ext_name}{name}",
							sources=[f"{ext_path}{source}"],
							extra_compile_args=extra_compile_args,
							extra_link_args=extra_link_args,
							language=language,
							include_dirs=[numpy.get_include()]))
    return ext_modules

pkg_metadata = dict(
		name="seislib",
		version=about["__version__"],
		description="Multi-scale Seismic Imaging",
		long_description=readme(),
		long_description_content_type="text/markdown",
		url="https://github.com/fmagrini/seislib",
		author="Fabrizio Magrini",
		author_email="fabrizio.magrini90@gmail.com",
		license="MIT",
		packages=find_packages(),
		package_data={  
			"seislib": ["tomography/_ray_theory/*"]
			},
		include_package_data=True,
		python_requires=">=3.6",
		keywords="Seismic Imaging, Surface Waves, Seismic Ambient Noise, Earthquake Seismology, Tomographic Inversion",
		configuration=configuration,
		cmdclass={"build_ext": build_ext},
		ext_modules=setup_cython_extension(),
		install_requires=['obspy>=1.1.0',
						  'numpy>=1.16.0',
						  'scipy>=1.3.0',
						  'matplotlib>=3.4.3',
						  'cartopy>=0.21.1',
						  'cython>=0.29',
        				  'cmcrameri>=1.8',
              			  'joblib>=1.4',
                   		  'portalocker>=3'],
		classifiers=["License :: OSI Approved :: MIT License",
					 "Programming Language :: Python :: 3",
					 "Programming Language :: Cython"]
		)

setup(**pkg_metadata)