From 6f2ac05468669a5ac1643a4a7ae3e7ada5a9bcce Mon Sep 17 00:00:00 2001
From: Nick Tustison <ntustison@gmail.com>
Date: Mon, 23 Nov 2015 08:16:36 -0800
Subject: [PATCH] PERF:  Employ mask for jlf-ization of SST

---
 Scripts/antsLongitudinalCorticalThickness.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Scripts/antsLongitudinalCorticalThickness.sh b/Scripts/antsLongitudinalCorticalThickness.sh
index 42ef7921e..4afc1d4fd 100755
--- a/Scripts/antsLongitudinalCorticalThickness.sh
+++ b/Scripts/antsLongitudinalCorticalThickness.sh
@@ -786,6 +786,7 @@ if [[ ${SINGLE_SUBJECT_TEMPLATE_PRIORS_EXIST} -eq 0 ]];
             logCmd ${ANTSPATH}/antsJointLabelFusion.sh \
               -d ${DIMENSION} \
               -q ${RUN_FAST_MALF_COOKING} \
+              -x ${SINGLE_SUBJECT_TEMPLATE_EXTRACTION_MASK} \
               -c ${DOQSUB} \
               -j ${CORES} \
               -t ${SINGLE_SUBJECT_TEMPLATE_SKULL_STRIPPED} \