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1. castools castools Public

   Forked from barakcohenlab/castools

   Command line tool for the CAS project

   Jupyter Notebook

2. regtools regtools Public

   Forked from griffithlab/regtools

   Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.

   C++

3. maury maury Public

   An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.

   R 2

4. arnav arnav Public

   Mutation calling using a site-specific binomial model

   C 1

5. bam-parser-tutorial bam-parser-tutorial Public

   A simple example of parsing BAM files using htslib

   C 12 2

6. mpileup2readcounts mpileup2readcounts Public

   Get per-nucleotide readcounts from samtools mpileup

   C++ 4 6