An Integrative Pipeline for Splicing Analyses (IPSA) written in the Nextflow DSL.
The pipeline performs the following splicing analyses:
- Quantification of splice junctions and splice boundaries
- Calculation of splicing indices, exon- and intron-centric
Install nextflow with the following command:
curl -fsSL get.nextflow.io | bash
Pull the docker image:
docker pull guigolab/ipsa-nf@sha256:88e680da318023d2a577893d5c4f0324ad720f83b13830b4e29f2d03f77490bb
Launch the test pipeline with the following command:
./nextflow run guigolab/ipsa-nf