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Contents of PEcAn scripts/ folder

Building PEcAn

./install.dependencies.R

Installs R functions required by R

$PEcAn_root/scripts/quickbuild.R

Uses devtools to quickly load all PEcAn packages in dev_mode()

./build.sh

Builds PEcAn

Documentation

./dependencies.R

makes graph of package dependencies for all PEcAn packages

./updateVersion.sh 0.0.1

Bumps Version number

./roxygenize.R

Updates documentation for all packages

Testing / Demonstration

Helper Functions

./Rfcn.R

executable for running R functions on remote machine at command line

ssh <machine> <package> <function> <args>

workflow.R test workflows

./workflow.R --settings pecan.xml

Loading Database

./dump.bety.sh

./load.bety.sh

./add.models.sh

./add.data.sh

./add.util.sh

convenience functions used in add.data.sh and add.models.sh