RNA-seq aligner

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Official home of genome aligner based upon notion of Cactus graphs

Next generation sequencing reads de novo assembler.

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs a…

Testing hybridization using species trees

Filters and denoises pyrosequenced amplicons

Prediction of Ancestral STate using the Maximum-Likelihood method