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NEWS.md

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DOSE 3.21.0.991

  • upate DisGeNET and NCG data (2021-11-14, Sun)

DOSE 3.19.4

  • update clusterProfiler citation (2021-09-30, Thu)
  • upate error message of enricher_internal (2021-9-3, Fri)

DOSE 3.19.3

  • upate DisGeNET and NCG data (2021-8-16, Mon)

DOSE 3.19.2

  • bug fixed, change 'is.na(path2name)' to 'all(is.na(path2name))' (2021-06-21, Mon)

DOSE 3.19.1

  • add dr slot to compareClusterResult, enrichRestul and gseaResult(2021-5-21, Fri)

DOSE 3.18

  • Bioconductor 3.13 release

DOSE 3.17

  • support setting seed for fgsea method if e.g. gseGO(seed = TRUE) (2020-10-28, Wed)

DOSE 3.16.0

  • Bioconductor 3.12 release (2020-10-28, Wed)

DOSE 3.15.4

  • update setReadable and geneInCategory methods for compareClusterResult object (2020-10-12, Mon)

DOSE 3.15.3

  • allow passing additional parameters to fgsea (2020-10-09, Fri)
  • add termsim and method slots to compareClusterResult, enrichRestul and gseaResult

DOSE 3.15.2

  • update NCG and DGN data (2020-10-09, Thu)

DOSE 3.14.0

  • Bioconductor 3.11 release

DOSE 3.13.2

  • fixed issue caused by R v4.0.0 (2020-03-12, Thu)

DOSE 3.13.1

  • remove S4Vectors dependencies (2019-12-19, Thu)
  • extend setReadable to support compareClusterResult (2019-12-02, Mon)
  • add gene2Symbol, keytype and readable slots for compareClusterResult
  • move compareClusterResult class definition from clusterProfiler (2019-11-01, Fri)

DOSE 3.12.0

  • Bioconductor 3.10 release

DOSE 3.11.2

  • ignore universe and print a message if users passing accidentally passing wrong input (2019-10-24, Thu)
  • gene with minimal ES value (NES < 0) will be reported in core_enrichment (2019-07-31, Wed)

DOSE 3.11.1

  • build_Anno now compatible with tibble (2019-05-28, Tue)

DOSE 3.10.0

  • Bioconductor 3.9 release

DOSE 3.9.4

  • export parse_ratio (2019-03-29, Tue)

DOSE 3.9.4

DOSE 3.9.2

DOSE 3.9.1

DOSE 3.8

  • Bioconductor 3.8 release

DOSE 3.7.1

  • S3 accessor methods only return enriched terms. (2018-06-20, Wed)