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Commits on Sep 5, 2014

• r816: read .alt file (not tested)

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Commits on Aug 29, 2014

• r815: optionally output ref fasta header

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Commits on Aug 26, 2014

• r810: add err_puts()

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Commits on Aug 25, 2014

• r809: new strategy for the -a mode

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• r808: a minor bug with the new index -b

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• r807: allow to change block size in bwt_gen

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Commits on Aug 8, 2014

• Merge branch 'master' into new-master

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Commits on Aug 7, 2014

• Fixed a bug related to the score returned.

  

  Mustafa Ozdal

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• Merge branch 'master' of github.com:lh3/bwa

  

  Mustafa Ozdal

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• don't process hard clipped SEQ

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  Mustafa Ozdal

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• r796: more debugging code

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• r795: intel's ksw_extend() replacement

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• first integration; compiled, but NOT TESTED!

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• don't process hard clipped SEQ

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Commits on Jul 14, 2014

• Released 0.7.10

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Commits on Jul 10, 2014

• r788: segfault when the last ref is "weird"

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• r787: use mem_seed_sw() also for non-PacBio reads

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Commits on May 19, 2014

• 0.7.9a-r786: fixed a segfault in a rare case

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• Wrong release number: 0.7.8 => 0.7.9

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• Release bwa-0.7.9-r783

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• Release bwa-0.7.9-r782

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Commits on May 16, 2014

• r779: fixed a memory leak in SE

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• r778: reduced the number of alloc() calls a bit

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Commits on May 15, 2014

• Updated release notes

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Commits on May 14, 2014

• r770: fixed a compiling warning

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• fixed wrong FAQ links

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• changed the heading format

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• updated README

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Commits on May 13, 2014

• r766: removed useless code

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• r765: fixed a declaration error

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• r764: changed -c in "-x pacbio" to 500

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Commits on May 12, 2014

• updated maual page

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Commits on May 11, 2014

• r762: cleanup for the new release; unfinished

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Commits on May 9, 2014

• r760: removed commented code

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• r759: bugfix - frac_rep not working

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