DESCRIPTION

Package: cophescan
Title: Adaptation of the Coloc Method for PheWAS
Version: 1.4.1
Authors@R: c(person("Ichcha", "Manipur", role=c("aut","cre"),
    email = "im504@cam.ac.uk"),
    person("Chris", "Wallace", role=c("aut")))
Maintainer: Ichcha Manipur <im504@cam.ac.uk>
Description: 
     A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see   
     Manipur et al (2023) <doi:10.1101/2023.06.29.546856>.
License: GPL-3
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 3.5.0)
URL: https://github.com/ichcha-m/cophescan,
    https://ichcha-m.github.io/cophescan/
BugReports: https://github.com/ichcha-m/cophescan/issues
Imports: 
    Rcpp (>= 1.0.7),
    coloc,
    data.table,
    ggplot2,
    ggrepel,
    pheatmap,
    methods,
    viridis,
    stats,
    grDevices,
    magrittr,
    utils,
    matrixStats,
    dplyr
Suggests:
    knitr,
    testthat (>= 3.0.0),
    rmarkdown,
    RColorBrewer,
    ggpubr
Collate: 
    'cophescan-package.R'
    'singlevar.R'
    'multivarsusie.R'
    'multitrait.R'
    'cophe_hyp_predict.R'
    'copheplots.R'
    'testdata.R'
    'RcppExports.R'
    'metrop_hier_priors.R'
    'zzz.R'
LinkingTo: Rcpp, RcppArmadillo
Config/testthat/edition: 3
ByteCompile: true