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Commits on Jul 9, 2019

• updated badges

  lh3

  committed
  3a2b0c0

• mention bwa-mem2

  lh3

  committed
  38e751a

Commits on Jan 23, 2019

• r1198: exit if .alt is malformatted

  Show description for 20d0a13
  lh3

  committed
  20d0a13

Commits on Apr 10, 2018

• Merge remote-tracking branch 'origin/master'

  lh3

  committed
  f090f93

Commits on Apr 7, 2018

• Merge pull request lh3#190 from ihaque-freenome/bwa-postalt-fix

  Show description for e624290
  lh3

  authored
  e624290

• Exclude empty SAM lines in bounds check for ALT postprocessor

  ihaque-freenome

  committed
  27dd1da

Commits on Apr 2, 2018

• Merge branch 'dev' into XB

  lh3

  committed
  11d53b0

• optionally write XB to include alignment score

  Show description for eb7dbc1
  lh3

  committed
  eb7dbc1

Commits on Nov 7, 2017

• emphasize pacbio and nanopore

  lh3

  committed
  fde1fd7

• wording changes

  lh3

  committed
  eef0427

• fixed a typo in link

  lh3

  committed
  1a2b0c0

• formatting change

  lh3

  committed
  824e00e

• claim bwa-mem long-read mode deprecated

  lh3

  committed
  ab64326

Commits on Oct 23, 2017

• Released bwa-0.7.17 (r1188)

  lh3

  committed
  9f26bfc

Commits on Sep 26, 2017

• r1187: a typo in command line help

  lh3

  committed
  b582816

Commits on Sep 11, 2017

• r1185: don't lower supp mapq with -5

  lh3

  committed
  340babd

Commits on Jul 31, 2017

• r1181: fixed a segfault (lh3#145) due to (lh3#138)

  lh3

  committed
  a9c688a

• Release 0.7.16-r1180

  lh3

  committed
  47d9fb2

Commits on Jul 30, 2017

• Merge pull request lh3#129 from lexentbio/bwakit_fix_sort

  Show description for 5d15c8b
  lh3

  authored
  5d15c8b

• Merge pull request lh3#138 from nh13/nh_mem_mate_cigar

  Show description for 950ea8c
  lh3

  authored
  950ea8c

• Merge pull request lh3#60 from jdagilliland/typo

  Show description for 83260cc
  lh3

  authored
  83260cc

• Merge pull request lh3#84 from jblachly/readgroupfix

  Show description for 1eee77a
  lh3

  authored
  1eee77a

• removed drone.io

  lh3

  committed
  24a8d66

• moved BWTFree() into BWTIncFree()

  Show description for 89a5c0c
  lh3

  committed
  89a5c0c

• Merge pull request lh3#139 from jmarshall/fixes

  Show description for 0976272
  lh3

  authored
  0976272

• Merge pull request lh3#70 from rmzelle/patch-1

  Show description for a54e769
  lh3

  authored
  a54e769

• Merge pull request lh3#96 from jpfeil/master

  Show description for 31bf49d
  lh3

  authored
  31bf49d

• Merge pull request lh3#123 from bwlang/patch-1

  Show description for 4989736
  lh3

  authored
  4989736

• Merge pull request lh3#141 from jmarshall/bwasw-nan

  Show description for 87ed015
  lh3

  authored
  87ed015

Commits on Jul 4, 2017

• Several trivial Debian patches

  Show description for c56c2e4
  

  tillea

  authored and

  jmarshall

  committed
  c56c2e4

Commits on Jul 3, 2017

• Mem should set the mate cigar tag.

  nh13

  committed
  3b96dce

• In bsw2_stat(), fail to infer when no pairs are within boundaries

  Show description for bcb475c
  jmarshall

  committed
  bcb475c

Commits on Jun 30, 2017

• Copy the whole kstring_t even if it contains NULs

  Show description for 6906498
  jmarshall

  committed
  6906498

Commits on Jun 29, 2017

• Expand tot_seqs variable to long long

  Show description for a61b1dc
  jmarshall

  committed
  a61b1dc

Commits on Jun 28, 2017

• Update README.md

  Show description for 5ede7eb
  

  rmzelle

  authored and

  jmarshall

  committed
  5ede7eb

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