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Commits on Jan 23, 2019

• r1198: exit if .alt is malformatted

  Show description for 20d0a13
  lh3

  committed
  20d0a13

Commits on Apr 2, 2018

• Merge branch 'dev' into XB

  lh3

  committed
  11d53b0

Commits on Oct 23, 2017

• Released bwa-0.7.17 (r1188)

  lh3

  committed
  9f26bfc

Commits on Sep 26, 2017

• r1187: a typo in command line help

  lh3

  committed
  b582816

Commits on Sep 11, 2017

• r1185: don't lower supp mapq with -5

  lh3

  committed
  340babd

Commits on Jul 31, 2017

• r1181: fixed a segfault (lh3#145) due to (lh3#138)

  lh3

  committed
  a9c688a

• Release 0.7.16-r1180

  lh3

  committed
  47d9fb2

Commits on Jun 8, 2017

• r1144: output debugging message to stderr

  lh3

  committed
  298284d

Commits on May 31, 2016

• r1142: added option -5 for Hi-C data

  lh3

  committed
  f123871

• Release bwa-0.7.15-r1140

  lh3

  committed
  850dd81

Commits on May 20, 2016

• r1138: fixed typo in insert size estimate (lh3#65)

  Show description for 58bcc25
  lh3

  committed
  58bcc25

Commits on May 4, 2016

• Release 0.7.14-r1136

  lh3

  committed
  5db0c36

Commits on May 3, 2016

• r1134: use AH:* instead of AH:Y

  lh3

  committed
  7ec3261

Commits on Apr 28, 2016

• r1130: changed "ah" to "AH"

  lh3

  committed
  3c03825

Commits on Feb 23, 2016

• Released bwa-0.7.13 (r1126)

  lh3

  committed
  9e5852c

Commits on Feb 1, 2016

• r1102: resumed versioning

  lh3

  committed
  86170ff

Commits on Mar 25, 2015

• r1044: fixed an out-of-order bug in kthread

  lh3

  committed
  3ae437a

Commits on Feb 8, 2015

• added maxk: max unique k-mer at each position

  lh3

  committed
  163f949

Commits on Dec 28, 2014

• Released 0.7.12

  lh3

  committed
  8211fbc

Commits on Dec 24, 2014

• r1038: wrong 0x100|0x800 flags in PE mode

  lh3

  committed
  e746a3e

• r1037: wrong read number flag

  lh3

  committed
  3ae8d4b

• r1036: PE ALT mapping incorrect

  Show description for b9bbf2d
  lh3

  committed
  b9bbf2d

Commits on Dec 23, 2014

• Released bwa-0.7.11-r1034

  lh3

  committed
  408fd5e

Commits on Dec 12, 2014

• r1027: segfault caused by the last commit

  lh3

  committed
  c561759

Commits on Dec 11, 2014

• r1025: accept file with -H; allow to replace @sq

  lh3

  committed
  925ddfb

Commits on Nov 26, 2014

• r1017: process I/O in a separate thread

  Show description for 9d8c906
  lh3

  committed
  9d8c906

Commits on Nov 19, 2014

• r1005: insert arbitrary header lines

  lh3

  committed
  b5f6ed3

Commits on Nov 18, 2014

• r998: smart pairing; allow mixture of SE/PE reads

  lh3

  committed
  80e4ecf

Commits on Nov 13, 2014

• r984: updated to the latest kseq.h

  lh3

  committed
  c5fe184

Commits on Nov 10, 2014

• r983: bugfix - wrong mate info

  Show description for 7eabcf4
  lh3

  committed
  7eabcf4

Commits on Oct 30, 2014

• r963: expose mask_level

  lh3

  committed
  9bf898f

Commits on Oct 28, 2014

• r960: merge changes from the master branch

  lh3

  committed
  6db2fd9

Commits on Oct 22, 2014

• r943: change the default -y to 20, but ...

  Show description for 3d129be
  lh3

  committed
  3d129be

• r942: ignore ALT hits when counting n_sub for ...

  Show description for 4177d6c
  lh3

  committed
  4177d6c

Commits on Oct 21, 2014

• r941: set a min length for 3rd-round seeding

  lh3

  committed
  60b7284

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