DESCRIPTION

Package: pseudoga
Title: Cell pseudotime reconstruction based on genetic algorithm
Version: 0.0.0.9000
Authors@R: c(
        person("Pronoy Kanti", "Mondal", role=c("aut", "cre" , "cph"), email="pronoykantimondal@gmail.com"),
        person("Udit Surya","Saha", role=c("ctb", "cph")),
        person("Indranil", "Mukhopadhyay", role=c("aut" , "cph"), email="indranilm100@gmail.com"))
Description: The package pseudoga can be used to perform pseudotime analysis on single cell gene expression data. Given a homogeneous population of cells, the cells can be ordered to form a trajectory. Given a heterogeneous population and cell cluster ids, the packages can be used to find a tree structure based on pseudotime ordering of cells.
Depends: R (>= 4.0.3), princurve, Matrix, exactRankTests, igraph, RColorBrewer, SingleCellExperiment, DESeq2, edgeR, HEM, pdist, parallel, rlang
biocViews:
License: GPL(>=2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2020-10-12 11:14:36 UTC; pronoykantimondal
Author: Pronoy Kanti Mondal [aut, cre, cph],
  Udit Surya Saha [ctb, cph],
  Indranil Mukhopadhyay [aut, cph]
Maintainer: Pronoy Kanti Mondal <pronoykantimondal@gmail.com>