Cleanup.

Jacob Silterra · Jacob Silterra · commit 83ce36b5e757 · 2014-01-17T11:47:22.000-05:00
Remove some unused elements from Row.
Rows no longer exist in a continuous region of the genome, and we don't want to imply they do

Fix typo in docstring of AlignmentTileLoader
diff --git a/src/org/broad/igv/sam/AlignmentTileLoader.java b/src/org/broad/igv/sam/AlignmentTileLoader.java
@@ -552,7 +552,7 @@ public SpliceJunctionHelper getSpliceJunctionHelper() {
         /**
          * Map-like structure designed to be accessible both by key, and by numeric index
          * Multiple values are stored for each key, and a list is returned
-         * If the key for a value is set as null, nothing can be added
+         * If the value for a key is set as null, nothing can be added
          *
          * Intended to support downsampling, where if a read name is added and then removed
          * we don't want to add the read pair

Original file line number	Diff line number	Diff line change
`@@ -552,7 +552,7 @@ public SpliceJunctionHelper getSpliceJunctionHelper() {`
`552`	`552`	`/**`
`553`	`553`	`* Map-like structure designed to be accessible both by key, and by numeric index`
`554`	`554`	`* Multiple values are stored for each key, and a list is returned`
`555`		`- * If the key for a value is set as null, nothing can be added`
	`555`	`+ * If the value for a key is set as null, nothing can be added`
`556`	`556`	`*`
`557`	`557`	`* Intended to support downsampling, where if a read name is added and then removed`
`558`	`558`	`* we don't want to add the read pair`