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Dataset Directory

This directory contains original input, and output of every step would also appear here.

Dataset

Note: you should first obtain the train and test data for the ISBI2015 challenge (link: https://smart-stats-tools.org/lesion-challenge-2015) and put the respective folders in this /data directory.

Template

Create a folder names "Template", copy the template volume from the path:

$FSLDIR/data/standard/MNI152_T1_1mm.nii.gz

In which, $FSLDIR is the directory where FSL is installed in.