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23 stars written in R
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'ggplot2' Based Publication Ready Plots

R 1,157 165 Updated Jun 19, 2024

NicheNet: predict active ligand-target links between interacting cells

R 515 121 Updated Feb 27, 2025

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

R 363 59 Updated Dec 11, 2024

Useful functions to make your scRNA-seq plot more cool!

R 319 30 Updated Jan 18, 2025

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

R 278 68 Updated Jul 12, 2024

A 'ggplot2' Extension for Consistent Axis Alignment

R 265 8 Updated Mar 7, 2025

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

R 243 24 Updated Mar 6, 2025

Tools and methods for analysis of single cell assay data in R

R 232 57 Updated Sep 27, 2023

R package to infer biological activities from omics data using a collection of methods.

R 228 24 Updated Feb 14, 2025

Methods for detecting doublets in single-cell sequencing data

R 184 16 Updated Feb 16, 2025

Assessing the purity of single cell population

R 121 18 Updated Jun 3, 2022

The integration of single cell rank-based gene set enrichment analysis

R 120 19 Updated Jul 23, 2024

R Package for Single-Cell Dataset Processing and Visualization

R 61 11 Updated Jul 26, 2021

Accurate and fast cell marker gene identification with COSG

R 57 8 Updated Dec 24, 2022

scGSVA: Perform GSVA for single cell RNA seq

R 55 5 Updated Nov 10, 2024

Guangchuang Yu's Plot Utilities

R 54 14 Updated Jun 8, 2022

Translate Words or Sentences via Online Translators

R 52 7 Updated Nov 18, 2024

🧠 Visualizing Single Cell and Spatial Transcriptomics

R 47 12 Updated Oct 30, 2024

Methods for decontamination of single cell data

R 38 3 Updated Feb 16, 2025

an integrative analysis tool for analysing large-scale single cell RNA-sequencing data

R 33 7 Updated Aug 7, 2023

Visualizing SingleCell data Using GGplot2

R 31 2 Updated Sep 28, 2024

Export and import graphics and tables to MicroSoft office

R 24 7 Updated Oct 9, 2024
R 21 5 Updated Oct 25, 2023