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clonevol Public
Forked from hdng/clonevolInferring and visualizing clonal evolution in multi-sample cancer sequencing
R GNU General Public License v3.0 UpdatedNov 9, 2019 -
idep Public
Forked from iDEP-SDSU/idepIntegrated Differential Expression and Pathway analysis
R UpdatedNov 8, 2019 -
facets Public
Forked from mskcc/facetsAlgorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
R UpdatedOct 30, 2019 -
single-cell-tutorial Public
Forked from theislab/single-cell-tutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Jupyter Notebook UpdatedOct 15, 2019 -
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PyVCF Public
Forked from jamescasbon/PyVCFA Variant Call Format reader for Python.
Python Other UpdatedOct 8, 2019 -
DNAscan Public
Forked from KHP-Informatics/DNAscanDNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
HTML MIT License UpdatedOct 8, 2019 -
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squid Public
Forked from Kingsford-Group/squidC++ BSD 3-Clause "New" or "Revised" License UpdatedOct 7, 2019 -
vcflib Public
Forked from vcflib/vcflibC++ library and cmdline tools for parsing and manipulating VCF files
C++ MIT License UpdatedOct 7, 2019 -
bcbio-nextgen Public
Forked from bcbio/bcbio-nextgenValidated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Python MIT License UpdatedOct 7, 2019 -
mosdepth Public
Forked from brentp/mosdepthfast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Nim MIT License UpdatedOct 6, 2019 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedOct 5, 2019 -
analysis-workflows Public
Forked from genome/analysis-workflowsMGI's Analysis Workflows and Pipelines managed by the BGA group.
Common Workflow Language MIT License UpdatedOct 4, 2019 -
naf Public
Forked from KirillKryukov/nafNucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
C zlib License UpdatedOct 3, 2019 -
Anime4K Public
Forked from bloc97/Anime4KA High-Quality Real Time Upscaler for Anime Video
Java MIT License UpdatedOct 2, 2019 -
bwa-mem2 Public
Forked from bwa-mem2/bwa-mem2The next version of bwa-mem (WIP; not recommended for production uses at the moment)
C++ Other UpdatedOct 1, 2019 -
AmpliconArchitect Public
Forked from virajbdeshpande/AmpliconArchitectAmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …
Python UpdatedSep 26, 2019 -
SpliceAI Public
Forked from Illumina/SpliceAIA deep learning-based tool to identify splice variants
Python Other UpdatedSep 25, 2019 -
DeepCC Public
Forked from CityUHK-CompBio/DeepCCa deep learning-based framework for cancer classification
R MIT License UpdatedSep 20, 2019 -
nerd-fonts Public
Forked from ryanoasis/nerd-fontsIconic font aggregator, collection, & patcher. 3,600+ icons, 40+ patched fonts: Hack, Source Code Pro, more. Glyph collections: Font Awesome, Material Design Icons, Octicons, & more
CSS MIT License UpdatedSep 19, 2019 -
awesome-command-line-apps Public
Forked from herrbischoff/awesome-command-line-apps🐚 Use your terminal shell to do awesome things.
Creative Commons Attribution Share Alike 4.0 International UpdatedSep 17, 2019 -
lsd Public
Forked from lsd-rs/lsdThe next gen ls command
Rust Apache License 2.0 UpdatedSep 14, 2019 -
mcfly Public
Forked from cantino/mcflyFly through your shell history. Great Scott!
Rust MIT License UpdatedAug 30, 2019 -
parliament2 Public
Forked from dnanexus-archive/parliament2Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Python Apache License 2.0 UpdatedAug 27, 2019 -
reproducible-image-denoising-state-of-the-art Public
Forked from wenbihan/reproducible-image-denoising-state-of-the-artCollection of popular and reproducible image denoising works.
UpdatedAug 4, 2019 -
NebulousSerendipity Public
Forked from Parsoa/NebulaUltra-efficient mapping-free structural variation genotyper
C++ UpdatedAug 2, 2019 -
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
C GNU General Public License v3.0 UpdatedJul 28, 2019 -