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  • v2ray Public

    Forked from 233boy/v2ray

    最好用的 V2Ray 一键安装脚本 & 管理脚本

    Shell Updated Nov 12, 2019
  • clonevol Public

    Forked from hdng/clonevol

    Inferring and visualizing clonal evolution in multi-sample cancer sequencing

    R GNU General Public License v3.0 Updated Nov 9, 2019
  • idep Public

    Forked from iDEP-SDSU/idep

    Integrated Differential Expression and Pathway analysis

    R Updated Nov 8, 2019
  • facets Public

    Forked from mskcc/facets

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R Updated Oct 30, 2019
  • Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook Updated Oct 15, 2019
  • Spring Public

    Forked from shubhamchandak94/Spring

    FASTQ compression

    C++ Other Updated Oct 14, 2019
  • PyVCF Public

    Forked from jamescasbon/PyVCF

    A Variant Call Format reader for Python.

    Python Other Updated Oct 8, 2019
  • DNAscan Public

    Forked from KHP-Informatics/DNAscan

    DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

    HTML MIT License Updated Oct 8, 2019
  • rose2 Public

    Forked from linlabbcm/rose2
    Python Other Updated Oct 7, 2019
  • squid Public

    Forked from Kingsford-Group/squid
    C++ BSD 3-Clause "New" or "Revised" License Updated Oct 7, 2019
  • vcflib Public

    Forked from vcflib/vcflib

    C++ library and cmdline tools for parsing and manipulating VCF files

    C++ MIT License Updated Oct 7, 2019
  • Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python MIT License Updated Oct 7, 2019
  • mosdepth Public

    Forked from brentp/mosdepth

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim MIT License Updated Oct 6, 2019
  • Conda recipes for the bioconda channel.

    Shell Updated Oct 5, 2019
  • MGI's Analysis Workflows and Pipelines managed by the BGA group.

    Common Workflow Language MIT License Updated Oct 4, 2019
  • naf Public

    Forked from KirillKryukov/naf

    Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

    C zlib License Updated Oct 3, 2019
  • Anime4K Public

    Forked from bloc97/Anime4K

    A High-Quality Real Time Upscaler for Anime Video

    Java MIT License Updated Oct 2, 2019
  • bwa-mem2 Public

    Forked from bwa-mem2/bwa-mem2

    The next version of bwa-mem (WIP; not recommended for production uses at the moment)

    C++ Other Updated Oct 1, 2019
  • AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …

    Python Updated Sep 26, 2019
  • SpliceAI Public

    Forked from Illumina/SpliceAI

    A deep learning-based tool to identify splice variants

    Python Other Updated Sep 25, 2019
  • DeepCC Public

    Forked from CityUHK-CompBio/DeepCC

    a deep learning-based framework for cancer classification

    R MIT License Updated Sep 20, 2019
  • nerd-fonts Public

    Forked from ryanoasis/nerd-fonts

    Iconic font aggregator, collection, & patcher. 3,600+ icons, 40+ patched fonts: Hack, Source Code Pro, more. Glyph collections: Font Awesome, Material Design Icons, Octicons, & more

    CSS MIT License Updated Sep 19, 2019
  • 🐚 Use your terminal shell to do awesome things.

    Creative Commons Attribution Share Alike 4.0 International Updated Sep 17, 2019
  • lsd Public

    Forked from lsd-rs/lsd

    The next gen ls command

    Rust Apache License 2.0 Updated Sep 14, 2019
  • mcfly Public

    Forked from cantino/mcfly

    Fly through your shell history. Great Scott!

    Rust MIT License Updated Aug 30, 2019
  • Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

    Python Apache License 2.0 Updated Aug 27, 2019
  • Collection of popular and reproducible image denoising works.

    Updated Aug 4, 2019
  • Ultra-efficient mapping-free structural variation genotyper

    C++ Updated Aug 2, 2019
  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C GNU General Public License v3.0 Updated Jul 28, 2019
  • SGZ Public

    Forked from FoundationMedicineInc/SGZ
    Python Updated Jul 22, 2019