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Commits on Apr 6, 2023

• Merge branch 'iqbal-lab-org:master' into master

  jeff-k

  authored
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Commits on Oct 13, 2022

• Version bump 0.11.3

  martinghunt

  committed
  ecac4da

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• update java

  martinghunt

  committed
  64d2f94

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• Minos 0.12.5

  martinghunt

  committed
  5b11c78

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Commits on Sep 26, 2022

• specify in/out files on readme

  iqbal-lab

  authored
  0d64dd2

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Commits on Sep 20, 2022

• Fix hmp url download links

  martinghunt

  committed
  9ccbaf3

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Commits on Aug 10, 2022

• Version bump 0.11.2

  martinghunt

  committed
  e4209b9

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• update cluster_vcf_records 0.13.2; minos 0.12.4

  martinghunt

  committed
  9be0189

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• Merge pull request iqbal-lab-org#99 from martinghunt/bug_fix_md5_vcf

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  martinghunt

  authored
  b52378d

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• update mykrobe

  martinghunt

  committed
  0c788da

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• rename VCF, instead of rsync and then delete

  martinghunt

  committed
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Commits on Jun 15, 2022

• Add mykrobe tb panel 202010

  martinghunt

  committed
  3336ecd

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Commits on Jun 14, 2022

• Version bump 0.11.1

  martinghunt

  committed
  edc4fd2

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• do not delete clockwork dir

  martinghunt

  committed
  d214e31

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Commits on Jun 8, 2022

• Remove singularity dir

  martinghunt

  committed
  b9133e0

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• Reduce container size by deleting files

  martinghunt

  committed
  79e1b84

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Commits on May 27, 2022

• Version bump 0.11.0

  martinghunt

  committed
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Commits on May 26, 2022

• Merge pull request iqbal-lab-org#96 from martinghunt/github_actions

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  martinghunt

  authored
  a26e919

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• add docker build, only build on master branch

  martinghunt

  committed
  1f47085

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• Remove bwa references

  martinghunt

  committed
  0c75995

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Commits on May 25, 2022

• use sam output file as minimap2 split prefix, otherwise uses cwd

  martinghunt

  committed
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Commits on May 23, 2022

• Use minimap2 split-prefix option to fix multiple read mappings

  martinghunt

  committed
  566b858

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• Use -I 0.5G with minimap2 indexing

  martinghunt

  committed
  bbce3db

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• Add Dockerfile

  martinghunt

  committed
  98d86bc

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Commits on May 20, 2022

• github actions tests

  martinghunt

  committed
  c36b04e

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• github actions tests

  martinghunt

  committed
  2c35a26

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• github actions tests

  martinghunt

  committed
  5a432d7

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• github actions tests

  martinghunt

  committed
  b785881

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• github actions tests

  martinghunt

  committed
  9e8b444

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• reduce memory usage so cortex doesn't crash

  martinghunt

  committed
  1789d58

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• github actions tests

  martinghunt

  committed
  fe2e683

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• github actions tests

  martinghunt

  committed
  01b4fe9

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• github actions tests

  martinghunt

  committed
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• github actions tests

  martinghunt

  committed
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• github actions tests

  martinghunt

  committed
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