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Commits on Sep 4, 2020

• Merge pull request ProteoWizard#1214 from ProteoWizard/bug/fix-SPS-MS3-master-scan-precursor

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  chambm

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• - fixed Thermo precursors not having spectrumRef when hasMultiplePrecursors() is true

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  chambm

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Commits on Sep 3, 2020

• Revert changes that had been made to Skyline.resx that came from a high resolution monitor. (ProteoWizard#1208) (ProteoWizard#1211)

  nickshulman

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Commits on Sep 2, 2020

• Change "psi-ms.obo" and "unimod.obo" to be "links" in Skyline.csproj so they do not need to be copied by the jamfile. (ProteoWizard#1209)

  nickshulman

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Commits on Sep 1, 2020

• Fix exception in Import Peptide Search if regression has failed between two runs and user has asked for iRTs. (ProteoWizard#1205)

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  nickshulman

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Commits on Aug 26, 2020

• Skyline/work/20200820 negative ce values for sciex (ProteoWizard#1201)

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  bspratt

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Commits on Aug 25, 2020

• MSAmanda fixes (ProteoWizard#1203)

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  chambm

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Commits on Aug 23, 2020

• Skyline/work/20200823 autoqc (ProteoWizard#1202)

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  vagisha

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Commits on Aug 21, 2020

• Add files that are missing from Product.wxs (ProteoWizard#1199)

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  nickshulman

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• * added missing OBO files to installers (ProteoWizard#1198)

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  chambm

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Commits on Aug 20, 2020

• * fixed Skyline and MSAmanda to allow multiple Skyline instances to run MSAmanda searches at the same time (ProteoWizard#1194)

  chambm

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• Fix intermittent failure in PasteMoleculesTest. (ProteoWizard#1195)

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  nickshulman

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Commits on Aug 19, 2020

• Squashed fixes

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  chambm

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• Move QualitativeIonRatio to the PrecursorResult. (ProteoWizard#1191)

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  nickshulman

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Commits on Aug 18, 2020

• - fixed BiblioSpec files created from MaxQuant without the -E option to include the file extension (ProteoWizard#1189)

  chambm

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• * updated timstof_prm_scheduler DLLs and bindings to provide access to scheduling metrics (ProteoWizard#1170)

  chambm

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• * updated Shimadzu IoModule to 3.7 (ProteoWizard#1187)

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  chambm

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• AutoQC Loader: work with both ClickOnce install and Administrator install of Skyline (ProteoWizard#1188)

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  vagisha

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• Skyline: Changes for feature complete release

  brendanx67

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Commits on Aug 16, 2020

• Skyline: Remove 0.05 as a detection cut-off suggestion - if anything it should be 0.0001

  brendanx67

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Commits on Aug 14, 2020

• Disable the part of TestDdaSearch that is intermittently failing on 32 bit TeamCity. (ProteoWizard#1185)

  nickshulman

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• Update MethodCreator.dll (ProteoWizard#1181)

  kaipot

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• Skyline: Fix IsPanorama() server check (ProteoWizard#1184)

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  vagisha

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Commits on Aug 13, 2020

• Performance improvements: (ProteoWizard#1183)

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  nickshulman

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• Make it so that truncated peaks get included for group comparisons and calibration curves if the Transition Instrument settings have "Triggered Acquisition" set. (ProteoWizard#1182)

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  nickshulman

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• Bruker timsTOF use IM window width from settings (ProteoWizard#1171)

  kaipot

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• Automatic iRT standard (ProteoWizard#1174)

  kaipot

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Commits on Aug 12, 2020

• Extracting metadata from result file names using regular expressions (ProteoWizard#1173)

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  nickshulman

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Commits on Aug 10, 2020

• Detection plots implementation (ProteoWizard#1138)

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  rita-gwen

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• Skyline: Update SkylineDailyRunner version numbers and copyright

  brendanx67

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Commits on Aug 7, 2020

• Qualitative Ion Ratio (ProteoWizard#1165)

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  nickshulman

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• Skyline: Display underlying error if an exception occurs while getting a list of folders from a Panorama server (ProteoWizard#1177)

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  vagisha

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• Merge pull request ProteoWizard#1175 from ProteoWizard/bug/fix-blib-ssl-scan-parsing

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  chambm

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Commits on Aug 6, 2020

• - fixed BiblioSpec SSL reader to support scan column with full nativeID format (e.g. controllerType=0 controllerNumber=1 scan=123) or index (e.g. index=123)

  chambm

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• implemented MS Amanda search within skyline (ProteoWizard#1044)

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