Files

Database-PDB
- DerivedData
  - 3CvFoldReference_AUCG_BC_100.pkl
  - 3CvFoldReference_AUCG_BC_30.pkl
  - 3CvFoldReference_AUCG_BC_40.pkl
  - 3CvFoldReference_AUCG_BC_50.pkl
  - 3CvFoldReference_AUCG_BC_70.pkl
  - 3CvFoldReference_AUCG_BC_90.pkl
  - 3CvFoldReference_AUCG_BC_95.pkl
  - 3CvFoldReference_AUCG_Mmseq_100.pkl
  - 3CvFoldReference_AUCG_Mmseq_30.pkl
  - 3CvFoldReference_AUCG_Mmseq_40.pkl
  - 3CvFoldReference_AUCG_Mmseq_50.pkl
  - 3CvFoldReference_AUCG_Mmseq_70.pkl
  - 3CvFoldReference_AUCG_Mmseq_90.pkl
  - 3CvFoldReference_AUCG_Mmseq_95.pkl
  - 3CvFoldReference_SXPR_BC.tar.gz.aa
  - 3CvFoldReference_SXPR_BC.tar.gz.ab
  - 3CvFoldReference_SXPR_BC.tar.gz.ac
  - 3CvFoldReference_SXPR_BC.tar.gz.ad
  - 3CvFoldReference_SXPR_BC.tar.gz.ae
  - 3CvFoldReference_SXPR_BC.tar.gz.af
  - 3CvFoldReference_SXPR_BC.tar.gz.ag
  - 3CvFoldReference_SXPR_BC.tar.gz.ah
  - 3CvFoldReference_SXPR_BC.tar.gz.ai
  - 3CvFoldReference_SXPR_BC.tar.gz.aj
  - 3CvFoldReference_SXPR_BC.tar.gz.ak
  - 3CvFoldReference_SXPR_BC.tar.gz.al
  - 3CvFoldReference_SXPR_BC.tar.gz.am
  - 3CvFoldReference_SXPR_BC.tar.gz.an
  - 3CvFoldReference_SXPR_BC.tar.gz.ao
  - 3CvFoldReference_SXPR_BC.tar.gz.ap
  - 3CvFoldReference_SXPR_BC.tar.gz.aq
  - 3CvFoldReference_SXPR_BC.tar.gz.ar
  - 3CvFoldReference_SXPR_BC.tar.gz.as
  - 3CvFoldReference_SXPR_BC.tar.gz.at
  - 3CvFoldReference_SXPR_BC.tar.gz.au
  - 3CvFoldReference_SXPR_BC.tar.gz.av
  - 3CvFoldReference_SXPR_BC.tar.gz.aw
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.aa
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ab
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ac
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ad
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ae
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.af
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ag
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ah
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ai
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.aj
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ak
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.al
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.am
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.an
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ao
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ap
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.aq
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.ar
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.as
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.at
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.au
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.av
  - 3CvFoldReference_SXPR_Mmseq.tar.gz.aw
  - ClanGraph_100.pkl
  - ClanGraph_30.pkl
  - ClanGraph_40.pkl
  - ClanGraph_50.pkl
  - ClanGraph_70.pkl
  - ClanGraph_90.pkl
  - ClanGraph_95.pkl
  - ClassIndex.pkl
  - Components-smiles-oe.smi
  - Components-smiles-stereo-oe.smi
  - EntityidChainidDict.pkl
  - Feature.IPCA.altman.AUCG.pkl
  - Feature.IPCA.altman.pkl
  - Feature.Mean.altman.npz
  - Feature.Std.altman.npz
  - MmseqClanGraph_100.pkl
  - MmseqClanGraph_100_Stat.pkl
  - MmseqClanGraph_30.pkl
  - MmseqClanGraph_30_Stat.pkl
  - MmseqClanGraph_40.pkl
  - MmseqClanGraph_40_Stat.pkl
  - MmseqClanGraph_50.pkl
  - MmseqClanGraph_50_Stat.pkl
  - MmseqClanGraph_70.pkl
  - MmseqClanGraph_70_Stat.pkl
  - MmseqClanGraph_90.pkl
  - MmseqClanGraph_90_Stat.pkl
  - MmseqClanGraph_95.pkl
  - MmseqClanGraph_95_Stat.pkl
  - NPIDB_ListOfComplexes.txt
  - README.md
  - SamplingWeightDf_BC90_Fold10.pkl
  - TaskClanFoldDf_BC90_Fold10.pkl
  - TaskClanFoldDf_TaskAUCG_BC100_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC30_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC40_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC50_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC70_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC90_Fold9.pkl
  - TaskClanFoldDf_TaskAUCG_BC95_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC100_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC30_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC40_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC50_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC70_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC90_Fold9.pkl
  - TaskClanFoldDf_TaskSXPR_BC95_Fold9.pkl
  - author.idx
  - bc-100.out
  - bc-30.out
  - bc-40.out
  - bc-50.out
  - bc-70.out
  - bc-90.out
  - bc-95.out
  - cc-counts-extra.tdd
  - cc-to-pdb.tdd
  - cmpd_res.idx
  - compound.idx
  - crystal.idx
  - mmseq-100.out
  - mmseq-30.out
  - mmseq-40.out
  - mmseq-50.out
  - mmseq-70.out
  - mmseq-90.out
  - mmseq-95.out
  - mmseqraw-100.out
  - mmseqraw-30.out
  - mmseqraw-40.out
  - mmseqraw-50.out
  - mmseqraw-70.out
  - mmseqraw-90.out
  - mmseqraw-95.out
  - on_hold.list
  - pdb_chain_cath_uniprot.lst
  - pdb_chain_enzyme.lst
  - pdb_chain_hmmer.lst
  - pdb_chain_pfam.lst
  - pdb_chain_scop2_uniprot.lst
  - pdb_chain_scop2b_sf_uniprot.lst
  - pdb_chain_scop_uniprot.lst
  - pdb_chain_uniprot.lst
  - pdb_entry_type.txt
  - pdb_pubmed.lst
  - pending_waiting.list
  - resolu.idx
  - source.idx
  - status_query.csv
  - status_query.seq
  - uniprot_pdb.lst
- apo
- cleansed
- dssp
- halo
- landmark
- typi
- CHECKSUM_ApoIntegrity.pkl
- CHECKSUM_CleansedIntegrity.pkl
- CHECKSUM_Datapoint.pkl
- CHECKSUM_HaloIntegrity.pkl
- CHECKSUM_LandmarkFpocketIntegrity.pkl
- CHECKSUM_LandmarkNucsiteIntegrity.pkl
- CHECKSUM_TypiIntegrity.pkl
- README.md
GoogleColab
LocalServerExample
Models
NightlyBackup
Notebooks
NucleicNet
.gitignore
LICENSE
README.md

DerivedData

Oct 16, 2022

2b34647 · Oct 16, 2022

Name		Name	Last commit message	Last commit date
parent directory ..
3CvFoldReference_AUCG_BC_100.pkl		3CvFoldReference_AUCG_BC_100.pkl
3CvFoldReference_AUCG_BC_30.pkl		3CvFoldReference_AUCG_BC_30.pkl
3CvFoldReference_AUCG_BC_40.pkl		3CvFoldReference_AUCG_BC_40.pkl
3CvFoldReference_AUCG_BC_50.pkl		3CvFoldReference_AUCG_BC_50.pkl
3CvFoldReference_AUCG_BC_70.pkl		3CvFoldReference_AUCG_BC_70.pkl
3CvFoldReference_AUCG_BC_90.pkl		3CvFoldReference_AUCG_BC_90.pkl
3CvFoldReference_AUCG_BC_95.pkl		3CvFoldReference_AUCG_BC_95.pkl
3CvFoldReference_AUCG_Mmseq_100.pkl		3CvFoldReference_AUCG_Mmseq_100.pkl
3CvFoldReference_AUCG_Mmseq_30.pkl		3CvFoldReference_AUCG_Mmseq_30.pkl
3CvFoldReference_AUCG_Mmseq_40.pkl		3CvFoldReference_AUCG_Mmseq_40.pkl
3CvFoldReference_AUCG_Mmseq_50.pkl		3CvFoldReference_AUCG_Mmseq_50.pkl
3CvFoldReference_AUCG_Mmseq_70.pkl		3CvFoldReference_AUCG_Mmseq_70.pkl
3CvFoldReference_AUCG_Mmseq_90.pkl		3CvFoldReference_AUCG_Mmseq_90.pkl
3CvFoldReference_AUCG_Mmseq_95.pkl		3CvFoldReference_AUCG_Mmseq_95.pkl
3CvFoldReference_SXPR_BC.tar.gz.aa		3CvFoldReference_SXPR_BC.tar.gz.aa
3CvFoldReference_SXPR_BC.tar.gz.ab		3CvFoldReference_SXPR_BC.tar.gz.ab
3CvFoldReference_SXPR_BC.tar.gz.ac		3CvFoldReference_SXPR_BC.tar.gz.ac
3CvFoldReference_SXPR_BC.tar.gz.ad		3CvFoldReference_SXPR_BC.tar.gz.ad
3CvFoldReference_SXPR_BC.tar.gz.ae		3CvFoldReference_SXPR_BC.tar.gz.ae
3CvFoldReference_SXPR_BC.tar.gz.af		3CvFoldReference_SXPR_BC.tar.gz.af
3CvFoldReference_SXPR_BC.tar.gz.ag		3CvFoldReference_SXPR_BC.tar.gz.ag
3CvFoldReference_SXPR_BC.tar.gz.ah		3CvFoldReference_SXPR_BC.tar.gz.ah
3CvFoldReference_SXPR_BC.tar.gz.ai		3CvFoldReference_SXPR_BC.tar.gz.ai
3CvFoldReference_SXPR_BC.tar.gz.aj		3CvFoldReference_SXPR_BC.tar.gz.aj
3CvFoldReference_SXPR_BC.tar.gz.ak		3CvFoldReference_SXPR_BC.tar.gz.ak
3CvFoldReference_SXPR_BC.tar.gz.al		3CvFoldReference_SXPR_BC.tar.gz.al
3CvFoldReference_SXPR_BC.tar.gz.am		3CvFoldReference_SXPR_BC.tar.gz.am
3CvFoldReference_SXPR_BC.tar.gz.an		3CvFoldReference_SXPR_BC.tar.gz.an
3CvFoldReference_SXPR_BC.tar.gz.ao		3CvFoldReference_SXPR_BC.tar.gz.ao
3CvFoldReference_SXPR_BC.tar.gz.ap		3CvFoldReference_SXPR_BC.tar.gz.ap
3CvFoldReference_SXPR_BC.tar.gz.aq		3CvFoldReference_SXPR_BC.tar.gz.aq
3CvFoldReference_SXPR_BC.tar.gz.ar		3CvFoldReference_SXPR_BC.tar.gz.ar
3CvFoldReference_SXPR_BC.tar.gz.as		3CvFoldReference_SXPR_BC.tar.gz.as
3CvFoldReference_SXPR_BC.tar.gz.at		3CvFoldReference_SXPR_BC.tar.gz.at
3CvFoldReference_SXPR_BC.tar.gz.au		3CvFoldReference_SXPR_BC.tar.gz.au
3CvFoldReference_SXPR_BC.tar.gz.av		3CvFoldReference_SXPR_BC.tar.gz.av
3CvFoldReference_SXPR_BC.tar.gz.aw		3CvFoldReference_SXPR_BC.tar.gz.aw
3CvFoldReference_SXPR_Mmseq.tar.gz.aa		3CvFoldReference_SXPR_Mmseq.tar.gz.aa
3CvFoldReference_SXPR_Mmseq.tar.gz.ab		3CvFoldReference_SXPR_Mmseq.tar.gz.ab
3CvFoldReference_SXPR_Mmseq.tar.gz.ac		3CvFoldReference_SXPR_Mmseq.tar.gz.ac
3CvFoldReference_SXPR_Mmseq.tar.gz.ad		3CvFoldReference_SXPR_Mmseq.tar.gz.ad
3CvFoldReference_SXPR_Mmseq.tar.gz.ae		3CvFoldReference_SXPR_Mmseq.tar.gz.ae
3CvFoldReference_SXPR_Mmseq.tar.gz.af		3CvFoldReference_SXPR_Mmseq.tar.gz.af
3CvFoldReference_SXPR_Mmseq.tar.gz.ag		3CvFoldReference_SXPR_Mmseq.tar.gz.ag
3CvFoldReference_SXPR_Mmseq.tar.gz.ah		3CvFoldReference_SXPR_Mmseq.tar.gz.ah
3CvFoldReference_SXPR_Mmseq.tar.gz.ai		3CvFoldReference_SXPR_Mmseq.tar.gz.ai
3CvFoldReference_SXPR_Mmseq.tar.gz.aj		3CvFoldReference_SXPR_Mmseq.tar.gz.aj
3CvFoldReference_SXPR_Mmseq.tar.gz.ak		3CvFoldReference_SXPR_Mmseq.tar.gz.ak
3CvFoldReference_SXPR_Mmseq.tar.gz.al		3CvFoldReference_SXPR_Mmseq.tar.gz.al
3CvFoldReference_SXPR_Mmseq.tar.gz.am		3CvFoldReference_SXPR_Mmseq.tar.gz.am
3CvFoldReference_SXPR_Mmseq.tar.gz.an		3CvFoldReference_SXPR_Mmseq.tar.gz.an
3CvFoldReference_SXPR_Mmseq.tar.gz.ao		3CvFoldReference_SXPR_Mmseq.tar.gz.ao
3CvFoldReference_SXPR_Mmseq.tar.gz.ap		3CvFoldReference_SXPR_Mmseq.tar.gz.ap
3CvFoldReference_SXPR_Mmseq.tar.gz.aq		3CvFoldReference_SXPR_Mmseq.tar.gz.aq
3CvFoldReference_SXPR_Mmseq.tar.gz.ar		3CvFoldReference_SXPR_Mmseq.tar.gz.ar
3CvFoldReference_SXPR_Mmseq.tar.gz.as		3CvFoldReference_SXPR_Mmseq.tar.gz.as
3CvFoldReference_SXPR_Mmseq.tar.gz.at		3CvFoldReference_SXPR_Mmseq.tar.gz.at
3CvFoldReference_SXPR_Mmseq.tar.gz.au		3CvFoldReference_SXPR_Mmseq.tar.gz.au
3CvFoldReference_SXPR_Mmseq.tar.gz.av		3CvFoldReference_SXPR_Mmseq.tar.gz.av
3CvFoldReference_SXPR_Mmseq.tar.gz.aw		3CvFoldReference_SXPR_Mmseq.tar.gz.aw
ClanGraph_100.pkl		ClanGraph_100.pkl
ClanGraph_30.pkl		ClanGraph_30.pkl
ClanGraph_40.pkl		ClanGraph_40.pkl
ClanGraph_50.pkl		ClanGraph_50.pkl
ClanGraph_70.pkl		ClanGraph_70.pkl
ClanGraph_90.pkl		ClanGraph_90.pkl
ClanGraph_95.pkl		ClanGraph_95.pkl
ClassIndex.pkl		ClassIndex.pkl
Components-smiles-oe.smi		Components-smiles-oe.smi
Components-smiles-stereo-oe.smi		Components-smiles-stereo-oe.smi
EntityidChainidDict.pkl		EntityidChainidDict.pkl
Feature.IPCA.altman.AUCG.pkl		Feature.IPCA.altman.AUCG.pkl
Feature.IPCA.altman.pkl		Feature.IPCA.altman.pkl
Feature.Mean.altman.npz		Feature.Mean.altman.npz
Feature.Std.altman.npz		Feature.Std.altman.npz
MmseqClanGraph_100.pkl		MmseqClanGraph_100.pkl
MmseqClanGraph_100_Stat.pkl		MmseqClanGraph_100_Stat.pkl
MmseqClanGraph_30.pkl		MmseqClanGraph_30.pkl
MmseqClanGraph_30_Stat.pkl		MmseqClanGraph_30_Stat.pkl
MmseqClanGraph_40.pkl		MmseqClanGraph_40.pkl
MmseqClanGraph_40_Stat.pkl		MmseqClanGraph_40_Stat.pkl
MmseqClanGraph_50.pkl		MmseqClanGraph_50.pkl
MmseqClanGraph_50_Stat.pkl		MmseqClanGraph_50_Stat.pkl
MmseqClanGraph_70.pkl		MmseqClanGraph_70.pkl
MmseqClanGraph_70_Stat.pkl		MmseqClanGraph_70_Stat.pkl
MmseqClanGraph_90.pkl		MmseqClanGraph_90.pkl
MmseqClanGraph_90_Stat.pkl		MmseqClanGraph_90_Stat.pkl
MmseqClanGraph_95.pkl		MmseqClanGraph_95.pkl
MmseqClanGraph_95_Stat.pkl		MmseqClanGraph_95_Stat.pkl
NPIDB_ListOfComplexes.txt		NPIDB_ListOfComplexes.txt
README.md		README.md
SamplingWeightDf_BC90_Fold10.pkl		SamplingWeightDf_BC90_Fold10.pkl
TaskClanFoldDf_BC90_Fold10.pkl		TaskClanFoldDf_BC90_Fold10.pkl
TaskClanFoldDf_TaskAUCG_BC100_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC100_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC30_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC30_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC40_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC40_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC50_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC50_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC70_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC70_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC90_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC90_Fold9.pkl
TaskClanFoldDf_TaskAUCG_BC95_Fold9.pkl		TaskClanFoldDf_TaskAUCG_BC95_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC100_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC100_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC30_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC30_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC40_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC40_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC50_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC50_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC70_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC70_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC90_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC90_Fold9.pkl
TaskClanFoldDf_TaskSXPR_BC95_Fold9.pkl		TaskClanFoldDf_TaskSXPR_BC95_Fold9.pkl
author.idx		author.idx
bc-100.out		bc-100.out
bc-30.out		bc-30.out
bc-40.out		bc-40.out
bc-50.out		bc-50.out
bc-70.out		bc-70.out
bc-90.out		bc-90.out
bc-95.out		bc-95.out
cc-counts-extra.tdd		cc-counts-extra.tdd
cc-to-pdb.tdd		cc-to-pdb.tdd
cmpd_res.idx		cmpd_res.idx
compound.idx		compound.idx
crystal.idx		crystal.idx
mmseq-100.out		mmseq-100.out
mmseq-30.out		mmseq-30.out
mmseq-40.out		mmseq-40.out
mmseq-50.out		mmseq-50.out
mmseq-70.out		mmseq-70.out
mmseq-90.out		mmseq-90.out
mmseq-95.out		mmseq-95.out
mmseqraw-100.out		mmseqraw-100.out
mmseqraw-30.out		mmseqraw-30.out
mmseqraw-40.out		mmseqraw-40.out
mmseqraw-50.out		mmseqraw-50.out
mmseqraw-70.out		mmseqraw-70.out
mmseqraw-90.out		mmseqraw-90.out
mmseqraw-95.out		mmseqraw-95.out
on_hold.list		on_hold.list
pdb_chain_cath_uniprot.lst		pdb_chain_cath_uniprot.lst
pdb_chain_enzyme.lst		pdb_chain_enzyme.lst
pdb_chain_hmmer.lst		pdb_chain_hmmer.lst
pdb_chain_pfam.lst		pdb_chain_pfam.lst
pdb_chain_scop2_uniprot.lst		pdb_chain_scop2_uniprot.lst
pdb_chain_scop2b_sf_uniprot.lst		pdb_chain_scop2b_sf_uniprot.lst
pdb_chain_scop_uniprot.lst		pdb_chain_scop_uniprot.lst
pdb_chain_uniprot.lst		pdb_chain_uniprot.lst
pdb_entry_type.txt		pdb_entry_type.txt
pdb_pubmed.lst		pdb_pubmed.lst
pending_waiting.list		pending_waiting.list
resolu.idx		resolu.idx
source.idx		source.idx
status_query.csv		status_query.csv
status_query.seq		status_query.seq
uniprot_pdb.lst		uniprot_pdb.lst

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