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Commits on Jul 1, 2021

• Merge pull request UPHL-BioNGS#47 from k-florek/master

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  erinyoung

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Commits on Jun 15, 2021

• config updates and bug fixes

  k-florek

  committed
  05dec3d

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Commits on Jun 14, 2021

• Merge pull request UPHL-BioNGS#46 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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• simplified vadr variables

  erinyoung

  authored
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• removed redundant vadr memory variable

  erinyoung

  committed
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Commits on Jun 10, 2021

• Merge pull request UPHL-BioNGS#45 from UPHL-BioNGS/erin-dev

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  erinyoung

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• Merge branch 'master' into erin-dev

  erinyoung

  authored
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• updated version

  erinyoung

  committed
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• made nextclade results flexible

  erinyoung

  committed
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• added pangolin column and fixed nextclade output

  erinyoung

  committed
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Commits on Jun 4, 2021

• Update Cecret.nf

  erinyoung

  authored
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• added samtools_depth

  erinyoung

  authored
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• Merge pull request UPHL-BioNGS#43 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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• Merge pull request UPHL-BioNGS#42 from k-florek/master

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  erinyoung

  authored
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• Update README.md

  erinyoung

  authored
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• took out stageinmode and started using collectFile

  erinyoung

  committed
  c254ac4

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• fixed variable error

  erinyoung

  committed
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Commits on May 26, 2021

• update to remove redundent settings and easier process tweaking

  k-florek

  committed
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Commits on May 14, 2021

• changed pangolin to per sample

  erinyoung

  committed
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• removed stageinmod

  erinyoung

  committed
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• Merge pull request UPHL-BioNGS#38 from fanninpm/parallelize-samtools-sort

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  erinyoung

  authored
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Commits on May 12, 2021

• Parallelize sort process

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  fanninpm

  committed
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Commits on Apr 29, 2021

• fixed variable name typo

  erinyoung

  committed
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Commits on Apr 22, 2021

• Merge pull request UPHL-BioNGS#36 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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• fixed formatting errors

  erinyoung

  committed
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Commits on Apr 16, 2021

• Merge pull request UPHL-BioNGS#35 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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Commits on Apr 15, 2021

• added vadr and samtools plot-ampliconstats

  erinyoung

  committed
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• Update README.md

  erinyoung

  authored
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Commits on Apr 14, 2021

• Merge pull request UPHL-BioNGS#34 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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• Merge pull request UPHL-BioNGS#33 from UPHL-BioNGS/erin-dev

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  erinyoung

  authored
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• added file back in

  erinyoung

  committed
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• for the merge

  erinyoung

  committed
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• move params.relatedness

  erinyoung

  committed
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Commits on Apr 13, 2021

• updated dag

  erinyoung

  committed
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• added example config

  erinyoung

  committed
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