GLIMPSE TOOLS

GLIMPSE is a set of tools for phasing and imputation for low-coverage sequencing datasets:

• GLIMPSE_chunk splits the genome into chunks ready for imputation/phasing
• GLIMPSE_impute quickly imputes low coverage sequencing data from a reference panel
• GLIMPSE_phase phases & imputes low coverage sequencing data
• GLIMPSE_ligate concatenates phased chunks of data into chromosome wide files
• GLIMPSE_sample allows sampling plausible haplotype configurations from the files
• GLIMPSE_concordance computes multiple accuracy metrics given some validation genotype data

The source code is provided in an open source format (license MIT) on github.

Documentation

https://odelaneau.github.io/GLIMPSE/

License

This project is licensed under the MIT License - see the LICENSE file for details