Skip to content

Issues: joey711/phyloseq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
722 Open 926 Closed
722 Open 926 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Differences in number of taxa after subset_samples and prune_taxa
#1651 opened Jan 1, 2023 by Alonso-Garcia
Difference between vegan::capscale and ordinate::(method = "CAP")?
#1649 opened Dec 27, 2022 by carmennns2
subset_taxa doesn't extract the taxa of my interest
#1648 opened Dec 23, 2022 by mghotbi
Trying to merge_phyloseq but problem with trees
#1647 opened Dec 15, 2022 by xaalii
1
command to merge a otu_table and tax_table
#1645 opened Dec 7, 2022 by Robvh-git
1
How to draw mean value and errorbar using the phyloseq package?
#1644 opened Dec 4, 2022 by Kangda384
rarefy_even depth question
#1642 opened Nov 25, 2022 by LaFra7
1
otu_table not working with vegan rarecurve
#1641 opened Nov 22, 2022 by ireneadm
5
lines on barplot
#1640 opened Nov 17, 2022 by metageno67
2
Possible Feature? estimate_presence?
#1639 opened Nov 17, 2022 by mawa86
5
Does anybody work with Reduced Representation Sequencing/GBS data for metagenomic analysis? I have problems creating taxonomic data.
#1638 opened Nov 17, 2022 by Pablo-UY
plot_tree() queries
#1637 opened Nov 15, 2022 by marwa38
3
tax_glom then psmelt centered-log-ratio transformed data?
#1636 opened Nov 14, 2022 by gabrielet
1
adding a phy_tree to phyloseq object removes otu_table and tax_table info
#1635 opened Nov 13, 2022 by laura-brettell
Question about rarefy_even_depth
#1634 opened Nov 4, 2022 by LaFra7
adding phy_tree reduces number of ASVs
#1632 opened Nov 3, 2022 by MCK-sketch
Combine different markers and have a unique phyloseq object
#1631 opened Oct 27, 2022 by LaFra7
phyloseq-sample data zero dimensions
#1629 opened Oct 22, 2022 by Gigiagio
Merging metadata with otu table in a phyloseq object
#1628 opened Oct 18, 2022 by lynneitelson
1
Custom x axis labels with plot_bar
#1627 opened Oct 10, 2022 by aravenscraft
1
envfit interpretation
#1626 opened Oct 5, 2022 by JH966
Is there a max. number of sample variables (imported as metadata file) that can be included in a phyloseq analysis to create an ordination plot?
#1625 opened Oct 5, 2022 by djdetweiler
Relative abundance
#1624 opened Oct 3, 2022 by mafbio
10
Change in internal nodes when appending phylogenetic tree to phyloseq
#1622 opened Sep 21, 2022 by LaraMacheriotou
sam_data slot is empty
#1621 opened Sep 7, 2022 by lynneitelson
5
ProTip! Adding no:label will show everything without a label.