fullAssembly.xml

<assembly>
  <id>jar-with-dependencies</id>
  <formats>
    <format>jar</format>
  </formats>
  <moduleSets>
    <moduleSet>
      <includes>
        <include>uk.ac.cam.ch.opsin:opsin-core</include>
        <include>uk.ac.cam.ch.opsin:opsin-inchi</include>
      </includes>
      <sources>
        <includeModuleDirectory>false</includeModuleDirectory>
        <fileSets>
          <fileSet>
            <directory>src/main/java</directory>
          </fileSet>
        </fileSets>
      </sources>
      <binaries>
        <unpack>true</unpack>
      </binaries>
    </moduleSet>
  </moduleSets>
  <files>
    <file>
      <source>LICENSE.txt</source>
    </file>
    <file>
      <source>README.md</source>
    </file>
    <file>
      <source>ReleaseNotes.txt</source>
    </file>
  </files>
  <includeBaseDirectory>false</includeBaseDirectory>
  <dependencySets>
    <dependencySet>
      <unpack>true</unpack>
      <scope>runtime</scope>
    </dependencySet>
  </dependencySets>
  <fileSets>
    <fileSet>
      <directory>${project.build.outputDirectory}</directory>
    </fileSet>
  </fileSets>
</assembly>