diff --git a/Makefile.in b/Makefile.in
index e3dfb01baa..f6933f6c7e 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -994,7 +994,12 @@ SHELL_SRC = \
 	$(TOP)/src/shell.c.in \
 	$(TOP)/ext/misc/shathree.c \
 	$(TOP)/ext/misc/fileio.c \
-	$(TOP)/ext/misc/completion.c
+	$(TOP)/ext/misc/completion.c \
+	$(TOP)/ext/misc/sqlar.c \
+	$(TOP)/ext/expert/sqlite3expert.c \
+	$(TOP)/ext/expert/sqlite3expert.h \
+	$(TOP)/ext/misc/zipfile.c \
+        $(TOP)/src/test_windirent.c
 
 shell.c:	$(SHELL_SRC) $(TOP)/tool/mkshellc.tcl
 	$(TCLSH_CMD) $(TOP)/tool/mkshellc.tcl >shell.c
diff --git a/Makefile.msc b/Makefile.msc
index e2a6bbe86d..c9b78b68f8 100644
--- a/Makefile.msc
+++ b/Makefile.msc
@@ -2078,7 +2078,9 @@ SHELL_SRC = \
 	$(TOP)\ext\misc\completion.c \
 	$(TOP)\ext\misc\sqlar.c \
 	$(TOP)\ext\expert\sqlite3expert.c \
-	$(TOP)\ext\expert\sqlite3expert.h
+	$(TOP)\ext\expert\sqlite3expert.h \
+	$(TOP)\ext\misc\zipfile.c \
+        $(TOP)\src\test_windirent.c
 
 # If use of zlib is enabled, add the "zipfile.c" source file.
 #
diff --git a/main.mk b/main.mk
index a6a7dbf1c2..5b6775a841 100644
--- a/main.mk
+++ b/main.mk
@@ -699,7 +699,8 @@ SHELL_SRC = \
 	$(TOP)/ext/misc/sqlar.c \
 	$(TOP)/ext/expert/sqlite3expert.c \
 	$(TOP)/ext/expert/sqlite3expert.h \
-	$(TOP)/ext/misc/zipfile.c
+	$(TOP)/ext/misc/zipfile.c \
+        $(TOP)/src/test_windirent.c
 
 shell.c:	$(SHELL_SRC) $(TOP)/tool/mkshellc.tcl
 	tclsh $(TOP)/tool/mkshellc.tcl >shell.c