📚 Freely available programming books

Data Science at the Command Line

A book covering the fundamentals of data visualization

Applied Computational Genomics Course at UU: Spring 2020

Embeddable genomic visualization component based on the Integrative Genomics Viewer

R interface to Deck.gl and Mapbox

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

Easy Amplicon data analysis pipeline

Web application to explore the Sequence Read Archive.

Import qiime2 artifacts to R

an R/shiny application for creation of Circos plot interactively

Long-read mock community experiments

PHATE dimensionality reduction method implemented in R

Camera Trap Data Package (Camtrap DP)

Biodiversity Data Quality (BDQ) Interest Group

Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes

A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.

Protocol for finding informative protein families and then using them to score metagenomic sets.

An attempt to benchmark metagenomic assembly tools

The code behind anvi'server