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20 stars written in Java
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Everything you need to know to get the job.

Java 64,015 12,916 Updated May 13, 2024

Arduino IDE 1.x

Java 14,277 6,997 Updated Oct 18, 2024

Gephi - The Open Graph Viz Platform

Java 6,050 1,576 Updated Mar 5, 2025

RStudio is an integrated development environment (IDE) for R

Java 4,764 1,112 Updated Mar 15, 2025

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 664 390 Updated Mar 11, 2025

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Java 602 391 Updated Mar 5, 2025

Java utilities for Bioinformatics

Java 496 133 Updated Mar 14, 2025

Automatically exported from code.google.com/p/figtree

Java 410 111 Updated Apr 1, 2024

Processing applet which creates the images seen in the Streamgraph paper

Java 282 38 Updated Aug 30, 2018
Java 264 81 Updated Feb 10, 2025

Accurate Species TRee ALgorithm

Java 253 69 Updated Apr 1, 2024

Visualization and analysis software for Hi-C data -

Java 251 58 Updated Aug 6, 2024

Bayesian Evolutionary Analysis by Sampling Trees

Java 245 83 Updated Mar 4, 2025

Text Only Genome Viewer!

Java 212 15 Updated Aug 4, 2024

Read trimming tool for Illumina NGS data.

Java 131 91 Updated Mar 10, 2015

Mining CRISPRs in Environmental Datasets

Java 107 18 Updated Feb 10, 2023

Automatically exported from code.google.com/p/jmodeltest2

Java 77 47 Updated Sep 26, 2021

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

Java 36 15 Updated Mar 10, 2025

Repository of our application for human-augmented binning

Java 27 14 Updated Apr 26, 2021

Source, executables and data files for CO-ARBitrator COI auto-curation algorithm

Java 1 1 Updated Mar 5, 2018