kane9530 / ZebReg2022 Public

forked from DillanSaunders/ZebReg

An Open3D-based tool for 3-dimensional rigid registration of whole tissue images using nuclei staining.

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
datasets		datasets
results		results
1a) Optimisations - Feasibility test.ipynb		1a) Optimisations - Feasibility test.ipynb
1b) Optimisations - the MAE metric.ipynb		1b) Optimisations - the MAE metric.ipynb
1c) Optimisations - Adding noise.ipynb		1c) Optimisations - Adding noise.ipynb
2) Iterative_pairwise_registration.ipynb		2) Iterative_pairwise_registration.ipynb
3) Exporting_Image.ipynb		3) Exporting_Image.ipynb
4)GA.ipynb		4)GA.ipynb
5)Aligning multiple channels.ipynb		5)Aligning multiple channels.ipynb
6) Ablation Alignment.ipynb		6) Ablation Alignment.ipynb
GA.py		GA.py
GA_gene_comparison.csv		GA_gene_comparison.csv
NSGA-III_colored_ICP.py		NSGA-III_colored_ICP.py
README.md		README.md
RegistrationObj.py		RegistrationObj.py
comparing_distributions.Rmd		comparing_distributions.Rmd
requirements-osx64.txt		requirements-osx64.txt
requirements-win64.txt		requirements-win64.txt
utils.py		utils.py
visualise.py		visualise.py