APA Regression Net - Predict and Engineer Alternative Polyadenylation

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

Explainability for Vision Transformers

Interval data structure

GUANinE Benchmark Dataset and Tools

The fastai deep learning library

The fastai book, published as Jupyter Notebooks

Graphical 5hmC Convolutional Networks

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

Single-cell epigenomics analysis tools

Single cell epigenome modeling

Benchmarking DNA Language Models on Biologically Meaningful Tasks

Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

Mamba SSM architecture

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

A curated list of recent and past chart understanding work based on our survey paper: From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Models.

All things prompt engineering

JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

✨✨Latest Advances on Multimodal Large Language Models

Biological foundation modeling from molecular to genome scale

This repository contains the ML For Games Course

Symphony: Interactive Data Widgets (CHI 2022)

A Python toolkit for analyzing machine learning models and datasets.