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Assessing agreement between different polygenic risk scores in the UK Biobank. https://www.medrxiv.org/content/10.1101/2022.02.09.22270719v1 https://2cjenn.github.io/AgrPRS/
Machine learning with Python workshop
A Tool to Annotate and Prioritize Exome Variants
GPT RStudio addins that enable GPT assisted coding, writing & analysis
Code, documentation, and discussion around the MIMIC-CXR database
A repository with various methods for clustering mixed datasets in python
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.
AC_TPC: Temporal Phenotyping using Deep Predicting Clustering of Disease Progression
R package for statistical tools with big matrices stored on disk.
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
This Jupyter Notebook implements the K-Nearest Neighbor, Logistic Regression, and Binary Decision Tree classifiers on the Iris dataset and compares the results
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Repository for the GA4GH phenopacket schema
A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
Bachelor thesis of Artificial Intelligence about clustering patients with ID based on HPO terms and their corresponding graphs using different similarity measures.
Theano was a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It is being continued as PyTensor: www.github.…
List of curated material on Applications of Graph and AI on Electronic Health Records.
Codebase for VIME: Extending the Success of Self- and Semi-supervised Learning to Tabular Domain - NeurIPS 2020
Intensity Functional Principal Components Analysis (IFPCA) for Longitudinal Encounters Data from Electronic Health Records
Supplemental Material for "Functional clustering methods for longitudinal data with application to electronic health records"