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Commits on Feb 3, 2022

• chore: pretrained HMMs only have 90% seqIdentity

  edkerk

  committed
  6c27c20

• refactor: more accurate progress reporting

  edkerk

  committed
  a8dc1d8

Commits on Jan 12, 2022

• refactor: mafftTests and cdhitTests use WSL on PC

  edkerk

  committed
  24c3021

• feat: checkInstallation develMode

  edkerk

  committed
  3524d52

• refactor: reporting of progress

  edkerk

  committed
  8f45375

Commits on Jan 6, 2022

• feat: remove MAFFT and CD-HIT Windows binaries

  edkerk

  committed
  d946302

• chore: update KEGG MAT-files to version 100

  edkerk

  committed
  43de3e8

• refactor: avoid unnecessary warnings about existing files

  edkerk

  committed
  074ccdb

• refactor: run MAFFT and CD-HIT via WSL on Windows

  edkerk

  committed
  f74cb0d

Commits on Jan 1, 2022

• Merge pull request SysBioChalmers#391 from SysBioChalmers/refactor/solveLP

  Show description for 2ab6124
  edkerk

  authored
  2ab6124

Commits on Dec 20, 2021

• Merge pull request SysBioChalmers#384 from SysBioChalmers/feat/testing-w-actions

  Show description for 42f758d
  mihai-sysbio

  authored
  42f758d

• fix: show all test results

  mihai-sysbio

  committed
  18fc138

• feat: post test results as pr comment

  mihai-sysbio

  committed
  081dcb1

• refactor: convertToIrrev speedup

  edkerk

  committed
  66d55f2

Commits on Dec 19, 2021

• Merge pull request SysBioChalmers#390 from SysBioChalmers/feat/changeKEGGHmmDownloadLinks

  Show description for 19e8e84
  simas232

  authored
  19e8e84

• doc: updated HTML documentation

  simas232

  committed
  6c489af

• feat: change download links for KEGG HMMs

  simas232

  committed
  a624ac0

• Merge pull request SysBioChalmers#389 from SysBioChalmers/fix/updateDocumentation

  Show description for da386dc
  simas232

  authored
  da386dc

• Merge pull request SysBioChalmers#388 from SysBioChalmers/fix/renameCompareModels

  Show description for 421bc53
  simas232

  authored
  421bc53

• Merge pull request SysBioChalmers#387 from SysBioChalmers/chore/updateExtSoftware

  Show description for 70aad10
  simas232

  authored
  70aad10

• fix: updateDocumentation now removes keggModel.mat file

  Show description for 7c8f7c5
  simas232

  committed
  7c8f7c5

• doc: update documentation

  simas232

  committed
  223ec34

• fix: rename compareModels to compareRxnsGenesMetsComps

  simas232

  committed
  52b3523

• doc: update BLAST+ version in software/versions.txt

  Show description for 008a2b4
  simas232

  committed
  008a2b4

• doc: add BLAST+ license

  simas232

  committed
  6b3fcbb

• chore: BLAST+ (Windows) update to 2.12.0

  simas232

  committed
  8ce8aa1

• chore: BLAST+ (Unix) update to 2.12.0

  simas232

  committed
  c2d2b9f

• chore: BLAST+ (macOS) update to 2.12.0

  simas232

  committed
  154e9fb

• chore: remove all existing BLAST+ files

  simas232

  committed
  4b2e626

• doc: update DIAMOND version in software/versions.txt

  Show description for d5718f3
  simas232

  committed
  d5718f3

• doc: add DIAMOND license

  simas232

  committed
  4eec284

• chore: DIAMOND (Windows) update to 2.0.13

  simas232

  committed
  71c009e

Commits on Dec 18, 2021

• chore: DIAMOND (Unix) update to 2.0.13

  simas232

  committed
  917aa66

• chore: DIAMOND (macOS) update to 2.0.13

  Show description for 01f3719
  simas232

  committed
  01f3719

• chore: remove all existing DIAMOND files

  simas232

  committed
  1b6f653

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