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Commits on Jul 5, 2017

• r168: last commit has a compiling error

  lh3

  committed
  deede0e

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• r167: -p sg output gfa1 compatible GFA

  lh3

  committed
  3217c1b

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• r166: fixed a harmless typo

  lh3

  committed
  c36a3f0

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Commits on Jul 2, 2017

• Merge branch 'master' of github.com:lh3/miniasm

  lh3

  committed
  ee58415

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• work with SAM generated by blasr

  lh3

  committed
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Commits on Jul 1, 2017

• also test reference length

  lh3

  committed
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• test invalid cigars and too many cigars

  lh3

  committed
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Commits on Jun 12, 2017

• Merge pull request lh3#23 from rikuu/master

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  lh3

  authored
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Commits on Jun 9, 2017

• only merge read selection passes when both enabled

  rikuu

  committed
  ce190c2

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Commits on Mar 10, 2017

• r159: fixed an integer overflow via voutcn/miniasm@b39d757

  lh3

  committed
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Commits on Feb 1, 2016

• r158: resumed versioning

  lh3

  committed
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Commits on Jan 30, 2016

• removed a duplicated entry

  lh3

  committed
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Commits on Jan 29, 2016

• revert a version close to r104

  lh3

  committed
  a46399a

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• removed chimeric detection - not working as intend

  lh3

  committed
  2141dc6

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• another way to discard weak overlap

  lh3

  committed
  8bc4478

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Commits on Jan 27, 2016

• optionally discard weak overlap (not by default)

  lh3

  committed
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Commits on Jan 25, 2016

• keep and output the matching ratio

  lh3

  committed
  17d5bd1

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• adjust both ml and bl after trimming

  lh3

  committed
  211f88c

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• adjust match length when trimming reads

  lh3

  committed
  974d01a

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• use matching length for short overlap removal

  lh3

  committed
  3d40171

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• differet rules for "chimera" detection

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  lh3

  committed
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Commits on Jan 24, 2016

• explain 'a' and 'x' lines

  lh3

  committed
  b531ef0

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Commits on Jan 23, 2016

• minor wording

  lh3

  committed
  9363b4c

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Commits on Jan 19, 2016

• a new method to evaluate layout

  lh3

  committed
  c93815f

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Commits on Jan 18, 2016

• explain memory

  lh3

  committed
  e189c06

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• added minimap evaluation

  lh3

  committed
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Commits on Jan 17, 2016

• require minimum overlap ratio

  lh3

  committed
  b7c79f3

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• compare two sorted PAF files

  lh3

  committed
  578f1fd

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• bug in paftop

  lh3

  committed
  add7af6

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• minor improvement to the manuscript

  lh3

  committed
  0da312b

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• merge & select the best mapping

  lh3

  committed
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Commits on Dec 21, 2015

• r137: chimeric depth cutoff depends on mindp

  lh3

  committed
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• r136: don't use coverage-based triming

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  lh3

  committed
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• don't print chimeric reads

  lh3

  committed
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• forgot to initialize

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  committed
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