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CHANGELOG.md

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5.7.1 (June 2020)

  • Fix import --log/--err with bulk import (#223)

5.7.0 (June 2020)

  • API changes:

    • Support use of CLI within OMERO.scripts (#186)
    • Add new conn.chownObjects() method (#195)
    • Loading options for Experimenters and Groups (#196)

  • Other fixes and updates:

    • Fix pywin import in Python 3.7 (#203)
    • Don't unset ICE_CONFIG on Windows (#193)
    • Ignore owner in omero.data.dir check (#208)
    • Fix JSON parsing on Python 3.5 (#213)
    • Fix client.download() on Python 3.5 (#215)
    • Warn if omero.db.poolsize is not set (#218)
    • admin diagnostics shows jar versions (#188)

5.6.2 (March 2020)

  • Doc: escape quotes in "Default:" sections (#185)
  • Doc: List preferred conda installation first (#190)
  • Fix: pass OMERODIR to processor (#197)
  • Fix: Improve error message for 'fs usage' (#192)
  • Fix: Get file size for download (#181)

5.6.1 (February 2020)

  • travis jobs: enable Windows (#134)
  • CmdError: implement __str__ (#151)
  • tables: call delete callback (#152)
  • fix doc (#170)
  • Add show-uuid option to sessions who (#174)
  • omero db password should be a string (#175)
  • Extend output of omero version (#176)
  • Improve PyYAML error message (#177)

5.6.0 (January 2020)

  • Remove bin/omero and lib/python (#157)
  • Bump Blitz version 5.5.5 (#158)
  • Processor passes locale to subprocess (#150)
  • omero.client ensures args is not None (#149)
  • Ignore OMERO_HOME with warning (#148)
  • Retry flaky tests up to five times (#144)
  • Disable new testLoadGlob when OMERODIR not set (#140)
  • Add numpy to requirements (#139)
  • admin.py: handle errors in getdirsize (#135)
  • Fix tables StringColumn for strings containing Unicode characters (#143)
  • Add bin/omero load --glob support (#137)
  • Drop hdfstorageV1 (#136)
  • Require OMERODIR to be set (#14)
  • Fix Windows build (#132)
  • Fix config parse command (#130)
  • Rename deprecated plugins (#124)
  • Activate all unit tests (#122)
  • Fix batch file annotation (#127)
  • Declare Pillow as a mandatory dependency of omero-py (#128)
  • Move external path module under omero_ext namespace (#123)
  • Fix pyinotify for DropBox (#119)
  • Fix DB creation script (#110)
  • Fix tables and getObjects
  • Fixes primarily focused on byte return types
  • Activate Python 3.5 testing (#68)
  • Add devtarget for developer friendliness (#33, #55)
  • Remove more web vestiges (#26)

API Changes

  • omero.gateway.FileAnnotationWrapper.getFileInChunks returns bytes
  • omero.gateway.ImageWrapper.exportOmeTiff returns bytes
  • omero.gateway.BlitzGateawy.createOriginalFileFromFileObj takes BytesIO
  • several return values should now be wrapped by BytesIO:
    • image.renderSplitChannel()
    • image.renderBirdsEyeView()
    • image.renderJpegRegion()
    • image.renderJpeg()
  • rlong instances now require explicit mapping:
    • omero_type(longValue) defaults to rint
    • omero.rtypes.wrap(longValue) defaults to rint

5.5.1 (September 2019)

  • Use omero-blitz 5.5.4 (#24)
  • Fix unit tests (#10, #17)
  • Improve PyPI deployment, add README, etc. (#6)
  • Remove web.py (#5)
  • Extract code from ome/openmicroscopy
  • Make minimal changes for a functioning python setup.py (#1)