Files

scripts

Eric McDonald

Jan 25, 2013

1b45fdd · Jan 25, 2013

Name	Name	Last commit message	Last commit date
parent directory ..
README.txt	README.txt	some initial script docs	Oct 30, 2010
abundance-dist.py	abundance-dist.py	Detect uniformly-zero abundance distributions to avoid divide-by-zero…	Jan 25, 2013
annotate-partitions.py	annotate-partitions.py	refactored partitioning a bit to use merge-partitions	Oct 18, 2011
count-median.py	count-median.py	added printout	Feb 7, 2012
count-overlap.py	count-overlap.py	remove curve figure	Jun 25, 2012
do-partition.sh	do-partition.sh	chmod +x scripts	Oct 24, 2011
edit-kmers.py	edit-kmers.py	started kmer editing script	Nov 28, 2010
extract-partitions.py	extract-partitions.py	fixed extract partitions	Aug 10, 2012
filter-abund.py	filter-abund.py	fix shebang	Feb 7, 2012
filter-stoptags.py	filter-stoptags.py	added shebang execution	Oct 25, 2011
find-knots.py	find-knots.py	changed to default for diginormed data	Mar 20, 2012
load-graph.py	load-graph.py	added proper tagset-building flag	Mar 1, 2012
load-into-counting.py	load-into-counting.py	added 'end messages' to several scripts	Jun 16, 2012
make-initial-stoptags.py	make-initial-stoptags.py	chmod +x scripts	Oct 24, 2011
merge-partitions.py	merge-partitions.py	knot/artifact removal scripts	Oct 18, 2011
normalize-by-kadian.py	normalize-by-kadian.py	tested kadian code more; added normalize-by-kadian	Feb 8, 2012
normalize-by-median.py	normalize-by-median.py	Comment clarification	Jul 10, 2012
partition-graph.py	partition-graph.py	Add virtual memory debugging support on Linux for partitioning code.	Nov 10, 2012

See ../doc/scripts.txt for basic documentation.