cmwl_pipeline

Dependencies:

• Java 8
• Scala 2.12
• SBT 1.3.0

Getting Started

Installation

First, install Java 8 JDK, Scala 2.12, the Scala build tool, and Docker on your computer.

To install Docker and docker-compose CLI, run the scripts/install-docker.sh script.

Install git-hooks, execute the following command:

bash hooks/install.sh

Compiling

To compile from the command line, use the command below:

    sbt compile

Running Locally

To run the application, use the following command:

    sbt run

Running the Tests

The tree below reflects how unit tests and integration tests are separated by different directories.

  -src
    |_it   // Here, you add new tests which load application context
    |      // and connect to datasources deployed on staging.
    |
    |_test // Here, you add pure unit tests which cover one or several specific
           // `cromwell.pipeline.components` and have no dependencies on infrastructure.

Running Unit Tests Locally

Use the command below to run unit tests:

    sbt test

Running Integration Tests Locally

To run the integration test suit, execute the following command:

sbt it:test

Default configuration can be overloaded in application.properties file located in the same directory as service jar

Local database usage

Locally we could start Postgres db instance via

docker-compose up

Build With

• SBT Build and dependency management
• AkkaHTTP Asynchronous, streaming-first HTTP server and client
• Slick Database query and access library
• Liquibase Migrations
• Circee JSON processing
• ScalaTest Unit-testing framework
• ScalaMock Unit-testing framework

Developer Guide

https://kb.epam.com/display/EPMLSTR/Cromwell+Developer+Guide