diff --git a/bin/classpath.sh b/bin/classpath.sh
deleted file mode 100755
index 3019fbc34..000000000
--- a/bin/classpath.sh
+++ /dev/null
@@ -1,56 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-dir=$1
-filename=${DIR}/../${dir}/target/.classpath.$(id -un)
-
-if [ -d ${DIR}/../${dir} ]; then
-  if [ "${RUN_MVN}" != '' ]; then
-    run_mvn='true'
-  elif [ ! -f ${filename} ]; then
-    run_mvn='true'
-  else
-    for pom in $(find ${DIR}/.. -name 'pom.xml'); do
-      if [ ${pom} -nt ${filename} ]; then
-        run_mvn='true'
-        break
-      fi
-    done
-  fi
-
-  if [ "${run_mvn}" == 'true' ]; then
-    echo 'running maven to calculate the classpath...' >&2
-    [ "${MVN_OPTS}" ] && echo "MVN_OPTS is ${MVN_OPTS}" >&2
-    mvn_output="$(cd ${DIR}/.. && mvn clean compile -DskipTests ${MVN_OPTS})"
-    mvn_exit=$?
-    if [ ${mvn_exit} -ne 0 ]; then
-      echo "${mvn_output}"
-      exit ${mvn_exit}
-    fi
-    echo 'maven finished.' >&2
-  else
-    echo 'not running maven, using cached classpath.' >&2
-  fi
-
-  if [ -f ${filename} ]; then
-    if [ -d ${DIR}/../${dir}/target/classes ]; then
-      echo "${DIR}/../${dir}/target/classes:$(cat ${filename})"
-    else
-      echo "${dir}/target/classes not found"
-      exit 3
-    fi
-  else
-    echo "${filename} not found"
-    exit 2
-  fi
-else
-  echo "${dir} is not a valid directory"
-  exit 1
-fi
diff --git a/bin/format.sh b/bin/format.sh
deleted file mode 100755
index 97416fa5b..000000000
--- a/bin/format.sh
+++ /dev/null
@@ -1,20 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-classpath=$(${DIR}/classpath.sh tools/format)
-if [ $? -ne 0 ]; then
-  echo "${classpath}"
-  exit
-fi
-
-java \
--Dfile.encoding=UTF-8 \
--classpath ${classpath} \
-org.visallo.tools.format.FormatVisallo
diff --git a/bin/importData.sh b/bin/importData.sh
deleted file mode 100755
index fd2339714..000000000
--- a/bin/importData.sh
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-classpath=$(${DIR}/classpath.sh dev/import-local)
-if [ $? -ne 0 ]; then
-  echo "${classpath}"
-  exit
-fi
-
-dir=$1
-if [ ! -d "$dir" ]; then
-    echo "you need to specify a data directory."
-	exit 1
-fi
-
-java \
--Xmx512m \
--Djava.awt.headless=true \
--Dfile.encoding=UTF-8 \
--Djava.library.path=$LD_LIBRARY_PATH \
--classpath ${classpath} \
-org.visallo.tools.Import \
---datadir=${dir} \
---queuedups
-
diff --git a/bin/owlExport.sh b/bin/owlExport.sh
deleted file mode 100755
index a3a597324..000000000
--- a/bin/owlExport.sh
+++ /dev/null
@@ -1,22 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-classpath=$(${DIR}/classpath.sh tools/cli)
-if [ $? -ne 0 ]; then
-  echo "${classpath}"
-  exit
-fi
-
-java \
--Dfile.encoding=UTF-8 \
--classpath ${classpath} \
--Xmx1024M \
-org.visallo.core.cmdline.OwlExport \
-$*
diff --git a/bin/owlImport.sh b/bin/owlImport.sh
deleted file mode 100755
index af89553ec..000000000
--- a/bin/owlImport.sh
+++ /dev/null
@@ -1,22 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-classpath=$(${DIR}/classpath.sh tools/cli)
-if [ $? -ne 0 ]; then
-  echo "${classpath}"
-  exit
-fi
-
-java \
--Dfile.encoding=UTF-8 \
--classpath ${classpath} \
--Xmx1024M \
-org.visallo.core.cmdline.OwlImport \
-$*
diff --git a/bin/setup-osx-env.sh b/bin/setup-osx-env.sh
deleted file mode 100755
index 49f0bb9ae..000000000
--- a/bin/setup-osx-env.sh
+++ /dev/null
@@ -1,49 +0,0 @@
-#!/bin/bash -eu
-
-DIR=$(cd $(dirname "$0") && pwd)
-
-function _usage {
-  local error_message=${*:-}
-  if [ "${error_message}" ]; then
-    echo >&2
-    echo >&2 $'\e[01;31mERROR:\e[00;00m' ${error_message}
-  fi
-  echo >&2
-  echo >&2 '----------------------------------------------------------'
-  echo >&2 $'Mac OS X \e[01;31mVisallo\e[00;00m Development Environment Setup Instructions'
-  echo >&2 '----------------------------------------------------------'
-  echo >&2
-  echo >&2 '1) Download and install the latest Java 8 SE Development Kit from http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html'
-  echo >&2 '2) Download and install Docker according to the instructions found at https://docs.docker.com/installation/mac/'
-  echo >&2 '     DO NOT run the Docker installer post installation instructions!'
-  echo >&2 '3) Run this script'
-  echo >&2
-  exit 1
-}
-
-function _message {
-  local message="$*"
-  echo $'\e[01;31m>>>\e[00;00m' ${message}
-}
-
-type javac &>/dev/null || _usage 'Java compiler (javac) not found in your PATH'
-type docker-machine &>/dev/null || _usage 'docker-machine not found in your PATH'
-
-_message 'Creating Docker virtual machine'
-docker-machine create \
-  --driver virtualbox \
-  --virtualbox-memory 8192 \
-  visallo-dev
-
-eval "$(docker-machine env visallo-dev)"
-
-_message 'Configuring Docker virtual machine'
-vm_ip=$(docker-machine ssh visallo-dev ip addr show eth1 | awk '/inet / {print $2}' | awk -F / '{print $1}')
-docker-machine ssh visallo-dev "sudo sed -i -e 's/visallo-dev localhost/localhost/' -e '2i ${vm_ip} visallo-dev' /etc/hosts"
-
-_message 'Pulling the latest Visallo development Docker image'
-docker pull visallo/dev
-
-_message 'You can now start your Visallo development environment Docker container by running the following commands:'
-_message '1) eval $(docker-machine env visallo-dev)'
-_message "2) $(cd ${DIR}/../docker; pwd)/run-dev.sh"
diff --git a/bin/testCoverage.sh b/bin/testCoverage.sh
deleted file mode 100755
index 7ae072fef..000000000
--- a/bin/testCoverage.sh
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/bin/bash
-#
-# This script provides an accurate code coverage report using Cobertura. Integration tests are included.
-# Based on http://thomassundberg.wordpress.com/2012/02/18/test-coverage-in-a-multi-module-maven-project/
-#
-# This must be run from the root project directory:
-#   bin/testCoverage.sh
-# If you want to use your local server so the integration tests run faster, define the ITEST_SERVER env variable:
-#   ITEST_SERVER=visallo-dev bin/testCoverage.sh
-# Note that using ITEST_SERVER wipes all data from the test server.
-#
-
-trap 'exit' ERR
-
-COBERTURA_TARGET_DIR=target/cobertura
-TEMP_SRC_DIR=${COBERTURA_TARGET_DIR}/src
-TEST_CLASSPATH_FILE=${COBERTURA_TARGET_DIR}/classpath
-REPORT_DIR=${COBERTURA_TARGET_DIR}/report
-COBERTURA_SER_FILE=${COBERTURA_TARGET_DIR}/cobertura.ser
-
-# Instrument
-mvn clean compile cobertura:instrument
-find . -name generated-classes | while read dir
-do
-  cp -R ${dir}/cobertura/* $(dirname ${dir})/classes/
-  rm -r ${dir}/cobertura
-done
-
-#Test
-if [ -z "${ITEST_SERVER}" ]; then
-  mvn -P test-integration -Drepository.ontology=org.visallo.vertexium.model.ontology.InMemoryOntologyRepository test
-else
-  mvn -P test-integration -Drepository.ontology=org.visallo.vertexium.model.ontology.InMemoryOntologyRepository -DtestServer=${ITEST_SERVER} test
-fi
-
-# Merge
-mkdir -p ${TEMP_SRC_DIR}
-find . -name "main" | grep "/src/" | while read dir
-do
-  cp -R ${dir}/java/ ${TEMP_SRC_DIR}
-done
-mvn -pl . dependency:build-classpath -DincludeScope=test -Dmdep.outputFile=${TEST_CLASSPATH_FILE}
-find . -name "*.ser" | xargs java -cp $(cat ${TEST_CLASSPATH_FILE}) net.sourceforge.cobertura.merge.Main \
-  --datafile ${COBERTURA_SER_FILE}
-
-# Report
-java -cp $(cat ${TEST_CLASSPATH_FILE}) net.sourceforge.cobertura.reporting.Main \
-  --datafile ${COBERTURA_SER_FILE} --destination ${REPORT_DIR} --format html ${TEMP_SRC_DIR}
-java -cp $(cat ${TEST_CLASSPATH_FILE}) net.sourceforge.cobertura.reporting.Main \
-  --datafile ${COBERTURA_SER_FILE} --destination ${REPORT_DIR} --format xml ${TEMP_SRC_DIR}
diff --git a/bin/webServer.sh b/bin/webServer.sh
deleted file mode 100755
index 1a407ef61..000000000
--- a/bin/webServer.sh
+++ /dev/null
@@ -1,35 +0,0 @@
-#!/bin/bash
-
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-  DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-  SOURCE="$(readlink "$SOURCE")"
-  [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-DIR="$(cd -P "$(dirname "$SOURCE")" && pwd)"
-
-classpath=$(${DIR}/classpath.sh dev/jetty-server)
-if [ $? -ne 0 ]; then
-  echo "${classpath}"
-  exit
-fi
-
-[ "${DEBUG_PORT}" ] || DEBUG_PORT=12345
-[ "$1" = '-d' ] && debug_option="-agentlib:jdwp=transport=dt_socket,server=y,suspend=y,address=${DEBUG_PORT}"
-
-cd ${DIR}/../
-
-java ${debug_option} \
--Dfile.encoding=UTF-8 \
--Djava.awt.headless=true \
--Djava.security.krb5.realm= \
--Djava.security.krb5.kdc= \
--Dvisallo.request.debug=true \
--classpath ${classpath} \
--Xmx1024M \
-org.visallo.web.JettyWebServer \
---port=8080 \
---httpsPort=8443 \
---keyStorePath=${DIR}/../dev/jetty-server/config/visallo-vm.visallo.org.jks \
---keyStorePassword=password \
---webAppDir=${DIR}/../web/war/src/main/webapp