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BWA-MEM2 for repetitive regions #437

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rmayang28 opened this issue Dec 3, 2024 · 0 comments
Open

BWA-MEM2 for repetitive regions #437

rmayang28 opened this issue Dec 3, 2024 · 0 comments

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@rmayang28
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Hi,

I have 150 PE Illumina reads that I'd like to map to whole yeast genome including repetitive subtelomere regions. Would you suggest I use BWA-MEM2 or minimap2 for such applications?

Thanks
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@rmayang28