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Commits on Dec 12, 2023

• r575: getindel to extract TSDs and polyAs

  lh3

  committed
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• r574: fixed a memory violation

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• r573: fixed reversed ds on reverse strand

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Commits on Dec 9, 2023

• r572: fixed memory leak

  lh3

  committed
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Commits on Dec 8, 2023

• r571: added the ds tag (update versioning)

  lh3

  committed
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• pre-allocate ds for efficiency

  lh3

  committed
  1a7c0a5

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• fixed wrong deletion sequence

  lh3

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• ds working on a small example

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  committed
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• prepare for ds

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Commits on Nov 29, 2023

• added code of conduct

  lh3

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Commits on Oct 27, 2023

• r565: improved the mergeindel outout format

  lh3

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• r564: changed the default for mergeindel

  lh3

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• r563: added getindel and mergeindel

  lh3

  committed
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Commits on Aug 14, 2023

• removed travis

  lh3

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• provide data and binaries through cookbook

  lh3

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• explain the command line

  lh3

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• moved the MHC SV example below

  lh3

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• added SV calling example

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Commits on Aug 13, 2023

• document multi-sample BED and VCF

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• added "addsample"

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• check the number of samples

  lh3

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• wrong ALT allele in header

  lh3

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• Merge branch 'tmp'

  lh3

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• command-line help for merge2vcf

  lh3

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• removed old merge2vcf from mgutils.js

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• added merged2vcf (requiring k8 v1.0)

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Commits on Jun 19, 2023

• Merge pull request #99 from kojix2/patch-1

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  lh3

  authored
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Commits on Jun 18, 2023

• Update README.md

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  kojix2

  authored
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Commits on Nov 20, 2022

• Release minigraph-0.20 (r559)

  lh3

  committed
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• r558: fixed integer overflow in cigar.

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  lh3

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Commits on Oct 29, 2022

• r557: fixed another assertion failure. Resolve #80

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Commits on Oct 25, 2022

• r556: fixed another assertion failure

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  lh3

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Commits on Oct 21, 2022

• r555: fixed an assertion failure

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  lh3

  committed
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Commits on Jun 24, 2022

• convert merge BED to VCF

  lh3

  committed
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• print sample names in merge

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