diff --git a/README.md b/README.md index 6710675..7f7d119 100644 --- a/README.md +++ b/README.md @@ -25,13 +25,14 @@ The online version can be easily accessed to perform analysis tasks with dataset devtools::install_github("likelet/IDEA") ``` -__User should notice that , the latest **shinyBS** is incompatible with IDEA at present ; Only the exact shingBS version (0.25) keep the IDEA work smoothly . This is because current shinyBS removed the__ ``` -progressBar() -``` __function used in IDEA. To install the compatible shinyBS, you can type__ -```R -devtools::install_github( "likelet/shinyBS") -``` -Here list the command to install the related packages manually if devtools failed in installation: +__User should notice that , the latest **shinyBS** is incompatible with IDEA at present ; Only the exact shingBS version (0.25) keep the IDEA work smoothly . This is because current shinyBS removed the__ `progressBar()`__function used in IDEA. To install the compatible shinyBS, you can type__ + + ```R + devtools::install_github( "likelet/shinyBS") + ``` + +Here list the command to install the related packages manually if devtools failed in installation: + ```R cDep <- c("abind") #dependencies from BIOCONDUCTOR @@ -89,7 +90,8 @@ The above command can automaticly install the several dependencies which allows ### Run information. -**For computer with GUI**
+**For computer with GUI** + Clone repository into local path and run as a Shiny App
example: Clone repository into local directory '/Document/IDEA' (so that ui.R locates as '/Document/IDEA/ui.R')
@@ -106,7 +108,8 @@ Also, after install IDEA pakcages with no error print, users can simply input. ``` function to run application locally; Since there is only one function in this package, you can also print help massege in your R console; -**For server or computer without GUI (Run IDEA on a server)**. +**For server or computer without GUI (Run IDEA on a server)**. + Install shiny-server first and finish the configurations step according to [http://rstudio.github.io/shiny-server/latest/](http://rstudio.github.io/shiny-server/latest/)
Pull the package and install dependencies into your R environment;
Copy _IDEA_ folder under _inst_ dir into /srv/shiny-sever/ (or orther app location configured in `shiny-sever.conf` file)