Segment Anything in Medical Images

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Style Transfer as Optimal Transport

Fusing Histology and Genomics via Deep Learning - IEEE TMI

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

Multi-modal Graph learning for Disease Prediction (IEEE Trans. on Medical imaging, TMI2022)

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

Multimodal deep learning model for long-term cancer survival prediction

[ICCV 2023 Oral] Multiple Instance Learning Framework with Masked Hard Instance Mining for Whole Slide Image Classification

HoVer-Net inference code for simultaneous nuclear segmentation and classification

Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)

Data and code to accompany our Nature publication

The implement for Comparison Detector: Convolutional Neural Networks for Cervical Cell Detection in the Limited-data Scenario.

A generative toolkit to translate H&E images to multiplexed IHC

CEll spatial Organization-based graph convolutional network

Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"

A Transformer Model Exploiting Histology Images and Spatial Gene Expression

Downloading and Creating labels for the TCGA lung Whole Slide Images

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"

Unofficial Instructions for downloading TCIA-CPTAC Pathology Images Lung Cohorts: LUAD, LSCC (aka LUSC)