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Commits on Jul 25, 2024

• revert to lcsk normal until debugging threaded

  lorewar2

  committed
  061b84b

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• make default method the threaded

  lorewar2

  committed
  26b82aa

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Commits on Jul 24, 2024

• remove incomplete ones pacbio fa

  lorewar2

  committed
  051ebb5

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• use fa for benchmark, update paper link

  lorewar2

  committed
  430aff4

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Commits on Jul 22, 2024

• input fa files and show progress

  lorewar2

  committed
  9de8815

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Commits on Jul 18, 2024

• save test cases for abpoa

  lorewar2

  committed
  e0af61a

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Commits on Jul 17, 2024

• output fa 2

  lorewar2

  committed
  c30d806

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Commits on Jul 10, 2024

• output fa 1

  lorewar2

  committed
  4d3d135

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• readme update

  lorewar2

  committed
  5edd811

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Commits on Jul 4, 2024

• run all at once spoa test

  lorewar2

  committed
  dfe5142

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• spoa test updated

  lorewar2

  committed
  ba4d127

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Commits on Jul 3, 2024

• add spoa test

  lorewar2

  committed
  c844efc

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• fix warnings plus dataset

  lorewar2

  committed
  1bed3c8

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• save test cases in fa

  lorewar2

  committed
  4dff27d

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• clean output

  lorewar2

  committed
  83353f0

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• evaluation part updated

  lorewar2

  committed
  031e25c

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• update query start for anchoring failed stuff

  lorewar2

  committed
  5a1f9a8

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Commits on Jun 27, 2024

• threaded poa

  lorewar2

  committed
  6b124ce

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• test cut fail limit

  lorewar2

  committed
  9748f5b

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• lcsk path added to anchoring

  lorewar2

  committed
  7ff0771

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Commits on Jun 26, 2024

• lcsk in anchor 1

  lorewar2

  committed
  e461f0f

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• add last section query

  lorewar2

  committed
  e0c788e

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Commits on Jun 25, 2024

• anchor finding fuc include query search

  lorewar2

  committed
  ebebb7d

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Commits on Jun 24, 2024

• clean up and to do added

  lorewar2

  committed
  5ddbf81

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Commits on Jun 20, 2024

• partitioning done

  lorewar2

  committed
  0f711b6

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Commits on Jun 19, 2024

• only positive section scores

  lorewar2

  committed
  5164c69

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• remove graph start end

  lorewar2

  committed
  13102b0

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• bug fix

  lorewar2

  committed
  1ad1123

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Commits on Jun 14, 2024

• section graph save before alignment

  lorewar2

  committed
  1c95170

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Commits on Jun 13, 2024

• divide the graph

  lorewar2

  committed
  3ff38c3

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• fixed some bugs and stuff

  lorewar2

  committed
  3d54844

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• threaded works but not good

  lorewar2

  committed
  f010d6b

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• threaded poa required data processed

  lorewar2

  committed
  b82d82d

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• anchor finding addded

  lorewar2

  committed
  3d0ff41

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Commits on Jun 12, 2024

• fix skip non unique kmers

  lorewar2

  committed
  fa11c4b

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